Index

_

__add__() (opengate.actors.dataitems.ArithmeticDataItem method) (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) (opengate.actors.dataitems.ItkImageDataItem method) __add_to_simulation__() (opengate.base.GateObject method) __call__() (opengate.base.MetaSingletonFatal method) (opengate.base.MetaUserInfo method) (opengate.postprocessors.base.ManagedExternalLink method) __can_be_deactivated__ (opengate.actors.actoroutput.ActorOutputBase attribute) __check_phSpace_params() (opengate.sources.beamsources.IonPencilBeamSource method) __del__() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) (opengate.sources.phidsources.PhotonFromIonDecaySource method) __delitem__() (opengate.base.GateUserInputSwitchDict method) __enter__() (opengate.base.GateObject method) (opengate.engines.SimulationEngine method) (opengate.engines.VisualisationEngine method) __exit__() (opengate.base.GateObject method) (opengate.engines.SimulationEngine method) (opengate.engines.VisualisationEngine method) __finalize_init__() (opengate.base.GateObject method) (opengate.geometry.volumes.VolumeBase method) __gate_dictionary_objects__ (in module opengate.definitions) __gate_list_objects__ (in module opengate.definitions) __getattr__() (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput method) (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) (opengate.utility.LazyModuleLoader method) __getitem__() (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo method) __getstate__() (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput method) (opengate.actors.arfactors.ARFActor method) (opengate.actors.base.ActorBase method) (opengate.actors.dynamicactors.VolumeRotationChanger method) (opengate.actors.dynamicactors.VolumeTranslationChanger method) (opengate.base.GateObject method) (opengate.engines.EngineBase method) (opengate.engines.SimulationEngine method) (opengate.geometry.materials.MaterialDatabase method) (opengate.geometry.solids.ImageSolid method) (opengate.geometry.solids.SolidBase method) (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.ParallelWorldVolume method) (opengate.geometry.volumes.RepeatParametrisedVolume method) (opengate.geometry.volumes.VolumeBase method) (opengate.geometry.volumes.VolumeTreeRoot method) (opengate.managers.PhysicsListManager method) (opengate.managers.PhysicsManager method) (opengate.physics.OpticalSurface method) (opengate.sources.gansources.GANSourceConditionalPairsGenerator method) (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) (opengate.sources.generic.SourceBase method) (opengate.sources.phidsources.PhotonFromIonDecaySource method) (opengate.sources.phspsources.PhaseSpaceSourceGenerator method) (opengate.sources.voxelsources.VoxelsSource method) __iadd__() (opengate.actors.dataitems.ArithmeticDataItem method) (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) (opengate.actors.dataitems.ItkImageDataItem method) __imul__() (opengate.actors.dataitems.ArithmeticDataItem method) (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) (opengate.actors.dataitems.ItkImageDataItem method) __initcpp__() (opengate.actors.arfactors.ARFActor method) (opengate.actors.arfactors.ARFTrainingDatasetActor method) (opengate.actors.base.ActorBase method) (opengate.actors.digitizers.DigitizerAdderActor method) (opengate.actors.digitizers.DigitizerBlurringActor method) (opengate.actors.digitizers.DigitizerEfficiencyActor method) (opengate.actors.digitizers.DigitizerEnergyWindowsActor method) (opengate.actors.digitizers.DigitizerHitsCollectionActor method) (opengate.actors.digitizers.DigitizerProjectionActor method) (opengate.actors.digitizers.DigitizerReadoutActor method) (opengate.actors.digitizers.DigitizerSpatialBlurringActor method) (opengate.actors.digitizers.PhaseSpaceActor method) (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.dynamicactors.DynamicGeometryActor method) (opengate.actors.filters.FilterBase method) (opengate.actors.filters.KineticEnergyFilter method) (opengate.actors.filters.ParticleFilter method) (opengate.actors.filters.ThresholdAttributeFilter method) (opengate.actors.filters.TrackCreatorProcessFilter method) (opengate.actors.filters.UnscatteredPrimaryFilter method) (opengate.actors.miscactors.BremSplittingActor method) (opengate.actors.miscactors.ComptSplittingActor method) (opengate.actors.miscactors.KillActor method) (opengate.actors.miscactors.SimulationStatisticsActor method) __itruediv__() (opengate.actors.dataitems.ArithmeticDataItem method) (opengate.actors.dataitems.DataItemContainer method) (opengate.actors.dataitems.ItkImageDataItem method) __len__() (opengate.actors.actoroutput.ActorOutputBase method) __mul__() (opengate.actors.dataitems.ArithmeticDataItem method) (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) (opengate.actors.dataitems.ItkImageDataItem method) __one_indent__ (in module opengate.definitions) __reduce__() (opengate.base.GateObject method) __repr__() (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo method) (opengate.geometry.materials.ElementBuilder method) (opengate.geometry.materials.MaterialBuilder method) __run_group_prefix__ (in module opengate.postprocessors.base) (in module opengate.postprocessors.unitbase) __setattr__() (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput method) (opengate.base.GateObject method) (opengate.base.GateUserInputSwitchDict method) __setitem__() (opengate.base.GateUserInputSwitchDict method) __setstate__() (opengate.actors.base.ActorBase method) (opengate.actors.filters.FilterBase method) (opengate.base.GateObject method) (opengate.engines.SimulationEngine method) (opengate.geometry.materials.MaterialDatabase method) (opengate.managers.PhysicsListManager method) (opengate.managers.PhysicsManager method) __str__() (opengate.actors.miscactors.ActorOutputStatisticsActor method) (opengate.actors.miscactors.SimulationStatisticsActor method) (opengate.base.GateObject method) (opengate.managers.ActorManager method) (opengate.managers.FilterManager method) (opengate.managers.PhysicsManager method) (opengate.managers.Simulation method) (opengate.managers.SourceManager method) (opengate.managers.VolumeManager method) (opengate.postprocessors.base.ManagedExternalLink method) (opengate.Simulation method) (opengate.sources.generic.SourceBase method) (opengate.userelement.UserElement method) (opengate.userinfo.UserInfo method) __truediv__() (opengate.actors.dataitems.ArithmeticDataItem method) (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) (opengate.actors.dataitems.ItkImageDataItem method)

__update_interface_properties__() (opengate.actors.base.ActorBase method) __world_name__ (in module opengate.definitions) _add_dynamic_parametrisation_to_userinfo() (opengate.base.DynamicGateObject method) _add_interface_to_user_output() (opengate.actors.base.ActorBase method) _add_user_output() (opengate.actors.base.ActorBase method) _add_user_output_root() (opengate.actors.digitizers.DigitizerBase method) _assert_data_is_not_none() (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) _assert_output_exists() (opengate.actors.base.ActorBase method) _beam_number_is_fishy (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) _beam_numbers_corrupt (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _beams (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _c_classid (opengate.postprocessors.base.ManagedExternalLink attribute) _chkrp() (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo method) _collect_item_identifiers() (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) _compose_output_path() (opengate.actors.actoroutput.ActorOutputBase method) _cp (opengate.contrib.tps.ionbeamtherapy.LayerInfo attribute) _create_actor() (opengate.managers.ActorManager method) _create_interface_property() (opengate.actors.base.ActorBase method) _created_classes (opengate.base.MetaUserInfo attribute) _current_random_seed (opengate.managers.Simulation attribute) (opengate.Simulation attribute) _data_item_classes (opengate.actors.dataitems.DataItemContainer attribute) (opengate.actors.dataitems.DoubleArray attribute) (opengate.actors.dataitems.QuotientItkImage attribute) (opengate.actors.dataitems.QuotientMeanItkImage attribute) (opengate.actors.dataitems.SingleArray attribute) (opengate.actors.dataitems.SingleItkImage attribute) (opengate.actors.dataitems.SingleItkImageWithVariance attribute) (opengate.actors.dataitems.SingleMeanItkImage attribute) _dcmbeam (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) _default_interface_class (opengate.actors.actoroutput.ActorOutputBase attribute) (opengate.actors.actoroutput.ActorOutputImage attribute) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer attribute) _define_pdf() (opengate.sources.beamsources.TreatmentPlanPBSource method) _dose_roiname (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _dose_roinumber (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _existing_properties_to_interfaces (opengate.actors.base.ActorBase attribute) _fatal_unknown_item() (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) _g4_production_cuts_initialized (opengate.physics.Region attribute) _g4_region_initialized (opengate.physics.Region attribute) _g4_user_limits_initialized (opengate.physics.Region attribute) _generate_auto_output_filename() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) _get_all_decay_channels() (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor method) _get_all_gamma_emissions() (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor method) _get_filename_node() (opengate.postprocessors.base.ManagedExternalLink method) _get_gammas_for_one_channel() (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor method) _get_gammas_for_one_level() (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor method) _get_input_path() (opengate.postprocessors.datafetchers.DataFetcherBase method) _get_or_create_output_structure() (opengate.postprocessors.unitbase.ProcessingUnitBase method) _get_pbs_position() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) (opengate.sources.beamsources.TreatmentPlanPBSource method) _get_pbs_rotation() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) (opengate.sources.beamsources.TreatmentPlanPBSource method) _get_user_info_options() (in module opengate.base) _get_voxelized_geometry() (opengate.managers.Simulation method) (opengate.Simulation method) _getter_hook_user_info_rotation() (in module opengate.geometry.volumes) _getter_hook_user_info_translation() (in module opengate.geometry.volumes) _icp0 (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) _index (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) _input_path (opengate.postprocessors.datafetchers.DataFetcherBase attribute) _insert_item_suffix() (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) _instances (opengate.base.MetaSingletonFatal attribute) _is_closed (opengate.engines.SimulationEngine attribute) (opengate.engines.VisualisationEngine attribute) _is_constructed (opengate.engines.VolumeEngine attribute) (opengate.geometry.volumes.VolumeBase attribute) _known_attributes (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput attribute) _layers (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) _level_daughter_info() (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor method) _make_boolean_volume() (in module opengate.geometry.volumes) _make_physical_volume() (opengate.geometry.volumes.VolumeBase method) _make_property() (in module opengate.base) _name (opengate.userinfo.UserInfo attribute) _need_tree_update (opengate.managers.VolumeManager attribute) (opengate.postprocessors.base.ProcessingGroupBase attribute) _open_input_file_handle() (opengate.postprocessors.datafetchers.DataFetcherWithFileHandle method) _output_name_root (opengate.actors.digitizers.DigitizerBase attribute) _polynomial_map() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) _request_processing_unit_tree_update() (opengate.postprocessors.unitbase.ProcessingUnitBase method) _request_volume_tree_update() (opengate.geometry.volumes.VolumeBase method) _required_number_of_input_units (opengate.postprocessors.listmode.ListModeSingleAttribute attribute) _rp (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _rpdir (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _rpfp (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _rpuid (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _run_simulation_engine() (opengate.managers.Simulation method) (opengate.Simulation method) _sample_n_particles_spots() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) _set_pbs_param_all_spots() (opengate.sources.beamsources.TreatmentPlanPBSource method) _setter_hook_active() (in module opengate.actors.actoroutput) _setter_hook_attached_to() (in module opengate.actors.base) (in module opengate.actors.dynamicactors) _setter_hook_belongs_to() (in module opengate.actors.actoroutput) _setter_hook_ensure_array() (in module opengate.geometry.volumes) _setter_hook_goal_uncertainty() (in module opengate.actors.doseactors) _setter_hook_image_spacing() (in module opengate.actors.arfactors) _setter_hook_input_actor() (in module opengate.postprocessors.datafetchers) _setter_hook_input_path() (in module opengate.postprocessors.datafetchers) _setter_hook_particles() (in module opengate.actors.miscactors) _setter_hook_path_in_hdf5_file() (in module opengate.postprocessors.datafetchers) _setter_hook_score_in_let_actor() (in module opengate.actors.doseactors) _setter_hook_stats_actor_output_filename() (in module opengate.actors.miscactors) _setter_hook_ste_of_mean() (in module opengate.actors.doseactors) _setter_hook_ste_of_mean_unbiased() (in module opengate.actors.doseactors) _setter_hook_uncertainty() (in module opengate.actors.doseactors) _setter_hook_user_info_mother() (in module opengate.geometry.volumes) _setter_hook_user_info_rotation() (in module opengate.geometry.volumes) _setter_hook_user_info_translation() (in module opengate.geometry.volumes) _setter_hook_voxel_materials() (in module opengate.geometry.volumes) _setter_hook_yields_to() (in module opengate.postprocessors.unitbase) _simulation (opengate.base.GateObject attribute) _simulation_engine_closing() (opengate.managers.PhysicsManager method) (opengate.managers.VolumeManager method) _switches (opengate.base.GateUserInputSwitchDict attribute) _temporary_warning_cache (opengate.base.GateObject attribute) _tuple_length (opengate.actors.dataitems.DataItemContainer property) _update_node() (opengate.geometry.volumes.ParallelWorldVolume method) (opengate.geometry.volumes.VolumeBase method) _update_output_coordinate_system() (opengate.actors.doseactors.VoxelDepositActor method) _user_output (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput property) _user_warnings (opengate.managers.Simulation attribute) (opengate.Simulation attribute) _warnings (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute)

A

a (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor attribute) action_engine (opengate.engines.SimulationEngine attribute) ActionEngine (class in opengate.engines) active (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput property) activity_source_filename (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) actor_engine (opengate.actors.base.ActorBase attribute) (opengate.engines.SimulationEngine attribute) actor_manager (opengate.actors.base.ActorBase property) (opengate.engines.ActorEngine property) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) actor_types (in module opengate.managers) ActorBase (class in opengate.actors.base) ActorEngine (class in opengate.engines) ActorManager (class in opengate.managers) ActorOutputBase (class in opengate.actors.actoroutput) ActorOutputImage (class in opengate.actors.actoroutput) ActorOutputQuotientImage (class in opengate.actors.actoroutput) ActorOutputQuotientMeanImage (class in opengate.actors.actoroutput) ActorOutputRoot (class in opengate.actors.actoroutput) ActorOutputSingleImage (class in opengate.actors.actoroutput) ActorOutputSingleImageWithVariance (class in opengate.actors.actoroutput) ActorOutputSingleMeanImage (class in opengate.actors.actoroutput) ActorOutputStatisticsActor (class in opengate.actors.miscactors) ActorOutputUsingDataItemContainer (class in opengate.actors.actoroutput) actors (opengate.actors.digitizers.Digitizer attribute) (opengate.engines.SimulationOutput attribute) (opengate.managers.ActorManager attribute) add_actor() (opengate.managers.ActorManager method) (opengate.managers.Simulation method) (opengate.Simulation method) add_back_compartment() (in module opengate.contrib.spect.siemens_intevo) add_back_scatter_plate() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_background_source() (in module opengate.contrib.phantoms.nemaiec) add_base_jaws() (in module opengate.contrib.linacs.elektaversa) add_border() (in module opengate.tests.utility) add_carm_box() (siemensciosalpha.Ciosalpha method) add_carm_source() (siemensciosalpha.Ciosalpha method) add_central_cylinder_source() (in module opengate.contrib.phantoms.nemaiec) add_circle() (in module opengate.tests.utility) add_collimator() (in module opengate.contrib.spect.ge_discovery_nm670) (in module opengate.contrib.spect.siemens_intevo) add_collimator_empty() (in module opengate.contrib.spect.siemens_intevo) add_collimator_he() (in module opengate.contrib.spect.siemens_intevo) add_collimator_lehr() (in module opengate.contrib.spect.siemens_intevo) add_collimator_melp() (in module opengate.contrib.spect.siemens_intevo) add_collimators() (siemensciosalpha.Ciosalpha method) add_colorbar() (in module opengate.tests.utility) add_crystal() (in module opengate.contrib.spect.ge_discovery_nm670) (in module opengate.contrib.spect.siemens_intevo) add_detection_plane_for_arf() (in module opengate.contrib.spect.ge_discovery_nm670) (in module opengate.contrib.spect.siemens_intevo) add_digitizer() (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.spect.ge_discovery_nm670) (in module opengate.contrib.spect.siemens_intevo) add_digitizer_adder() (in module opengate.contrib.spect.siemens_intevo) add_digitizer_blur() (in module opengate.contrib.spect.siemens_intevo) add_digitizer_blur_test2() (in module opengate.contrib.spect.siemens_intevo) add_digitizer_ene_win() (in module opengate.contrib.spect.siemens_intevo) add_digitizer_energy_windows() (in module opengate.contrib.spect.ge_discovery_nm670) add_digitizer_hits() (in module opengate.contrib.spect.siemens_intevo) add_digitizer_lu177() (in module opengate.contrib.spect.ge_discovery_nm670) (in module opengate.contrib.spect.siemens_intevo) add_digitizer_proj() (in module opengate.contrib.spect.siemens_intevo) add_digitizer_tc99m() (in module opengate.contrib.spect.ge_discovery_nm670) (in module opengate.contrib.spect.siemens_intevo) add_digitizer_test1() (in module opengate.contrib.spect.siemens_intevo) add_digitizer_test2() (in module opengate.contrib.spect.siemens_intevo) add_digitizer_v2_old() (in module opengate.contrib.spect.siemens_intevo) add_dynamic_parametrisation() (opengate.base.DynamicGateObject method) (opengate.geometry.volumes.RepeatableVolume method) add_electron_source() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_element_to_material() (opengate.geometry.materials.MaterialBuilder method) add_empty_linac_box() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_fake_spect_head() (in module opengate.contrib.spect.ge_discovery_nm670) add_fake_table() (in module opengate.contrib.spect.ge_discovery_nm670) add_filter() (opengate.managers.FilterManager method) (opengate.managers.Simulation method) (opengate.Simulation method) add_flattening_filter() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_g4_command_after_init() (opengate.engines.SimulationEngine method) (opengate.managers.Simulation method) (opengate.Simulation method) add_g4_command_before_init() (opengate.managers.Simulation method) (opengate.Simulation method) add_head_box() (in module opengate.contrib.spect.siemens_intevo) add_iec_all_spheres() (in module opengate.contrib.phantoms.nemaiec) add_iec_body() (in module opengate.contrib.phantoms.nemaiec) add_iec_central_cylinder() (in module opengate.contrib.phantoms.nemaiec) add_iec_one_sphere() (in module opengate.contrib.phantoms.nemaiec) add_iec_phantom() (in module opengate.contrib.phantoms.nemaiec) add_ionizing_chamber() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_jaw() (in module opengate.contrib.linacs.elektaversa) add_jaw_visu() (in module opengate.contrib.linacs.elektaversa) add_jaws() (in module opengate.contrib.linacs.elektaversa) add_jaws_visu() (in module opengate.contrib.linacs.elektaversa) add_light_guide() (in module opengate.contrib.spect.siemens_intevo) add_linac() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_linac_materials() (in module opengate.contrib.linacs.elektaversa) add_material_database() (opengate.managers.VolumeManager method) add_material_nb_atoms() (opengate.geometry.materials.MaterialDatabase method)

add_material_weights() (opengate.geometry.materials.MaterialDatabase method) add_mirror() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_mlc() (in module opengate.contrib.linacs.elektaversa) add_module() (opengate.actors.digitizers.Digitizer method) add_necr_phantom() (in module opengate.contrib.phantoms.necr) add_necr_source() (in module opengate.contrib.phantoms.necr) add_necr_source_debug() (in module opengate.contrib.phantoms.necr) add_one_sphere_source() (in module opengate.contrib.phantoms.nemaiec) add_optical_surface() (opengate.managers.PhysicsManager method) add_parallel_world() (opengate.managers.Simulation method) (opengate.managers.VolumeManager method) (opengate.Simulation method) add_pet() (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) add_phase_space() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_phase_space_plane() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_phase_space_source() (in module opengate.contrib.linacs.elektaversa) add_post_processor() (opengate.managers.PostProcessingManager method) add_primary_collimator() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_processing_unit() (opengate.postprocessors.base.ProcessingGroupBase method) add_properties_to_class() (in module opengate.base) add_region() (opengate.managers.PhysicsManager method) add_shielding() (in module opengate.contrib.spect.siemens_intevo) add_shielding_he() (in module opengate.contrib.spect.siemens_intevo) add_shielding_lehr_melp() (in module opengate.contrib.spect.siemens_intevo) add_simplified_digitizer_tc99m() (in module opengate.contrib.spect.ge_discovery_nm670) add_source() (opengate.managers.Simulation method) (opengate.managers.SourceManager method) (opengate.Simulation method) add_spect_box() (in module opengate.contrib.spect.ge_discovery_nm670) add_spect_head() (in module opengate.contrib.spect.ge_discovery_nm670) (in module opengate.contrib.spect.siemens_intevo) add_spheres_sources() (in module opengate.contrib.phantoms.nemaiec) add_submat_to_material() (opengate.geometry.materials.MaterialBuilder method) add_surface() (opengate.managers.Simulation method) (opengate.Simulation method) add_table() (in module opengate.contrib.pet.philipsvereos) add_target() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) add_to_source_manager() (opengate.sources.generic.SourceBase method) (opengate.sources.phidsources.PhotonFromIonDecaySource method) add_volume() (opengate.managers.Simulation method) (opengate.managers.VolumeManager method) (opengate.Simulation method) add_xray_tank() (siemensciosalpha.Ciosalpha method) Aeff (opengate.geometry.materials.ElementBuilder attribute) align_image_with_physical_volume() (in module opengate.image) all_beta_plus_radionuclides (in module opengate.sources.generic) all_initial_units (opengate.postprocessors.base.PostProcessor property) all_processing_units (opengate.postprocessors.base.ProcessingGroupBase property) all_volume_names (opengate.managers.VolumeManager property) all_world_volumes (opengate.managers.VolumeManager property) ancestor_volumes (opengate.geometry.volumes.VolumeBase property) apply() (opengate.actors.arfactors.ARFActor method) apply_all_g4_commands_after_init() (opengate.engines.SimulationEngine method) apply_all_g4_commands_before_init() (opengate.engines.SimulationEngine method) apply_change() (opengate.actors.dynamicactors.GeometryChanger method) (opengate.actors.dynamicactors.VolumeImageChanger method) (opengate.actors.dynamicactors.VolumeRotationChanger method) (opengate.actors.dynamicactors.VolumeTranslationChanger method) arangeDx() (in module opengate.tests.utility) arf_build_image_from_projected_points() (opengate.actors.arfactors.ARFActor method) ARFActor (class in opengate.actors.arfactors) ARFTrainingDatasetActor (class in opengate.actors.arfactors) ArithmeticDataItem (class in opengate.actors.dataitems) ArrayDataItem (class in opengate.actors.dataitems) assert_equal_dic() (in module opengate.utility) assert_filtered_imagesprofile1D() (in module opengate.tests.utility) assert_images() (in module opengate.tests.utility) assert_images_properties() (in module opengate.tests.utility) assert_images_ratio() (in module opengate.tests.utility) assert_images_ratio_per_voxel() (in module opengate.tests.utility) assert_img_sum() (in module opengate.tests.utility) assert_input_is_compatible() (opengate.postprocessors.listmode.ListModeSingleAttribute method) assert_key() (in module opengate.utility) assert_keys() (in module opengate.utility) assert_run_timing() (in module opengate.runtiming) assert_same_material() (in module opengate.geometry.materials) assert_stats() (in module opengate.tests.utility) assert_stats_json() (in module opengate.tests.utility) assert_unique_element_name() (in module opengate.utility) associate_volume() (opengate.physics.Region method) atomic_relaxation_get_ene_weights_from_df() (in module opengate.sources.phidsources) atomic_relaxation_get_filename() (in module opengate.sources.phidsources) atomic_relaxation_load() (in module opengate.sources.phidsources) atomic_relaxation_load_all_gammas() (in module opengate.sources.phidsources) atomic_relaxation_load_from_data_file() (in module opengate.sources.phidsources) atomic_relaxation_load_from_data_file_NEW1() (in module opengate.sources.phidsources) atomic_relaxation_load_from_data_file_OLD() (in module opengate.sources.phidsources) atomic_relaxation_load_from_file() (in module opengate.sources.phidsources) atomic_relaxation_load_from_iaea_website() (in module opengate.sources.phidsources) atomic_relaxation_store_to_file() (in module opengate.sources.phidsources) attached_to (opengate.actors.base.ActorBase attribute) (opengate.actors.dynamicactors.GeometryChanger attribute) attached_to_volume (opengate.actors.base.ActorBase property) (opengate.actors.dynamicactors.GeometryChanger property) attribute (opengate.actors.filters.ThresholdAttributeFilter attribute) authorize_repeated_volumes (opengate.actors.digitizers.DigitizerBase attribute) available_data_container_classes (in module opengate.actors.dataitems) available_filters (opengate.managers.FilterManager property) available_g4_physics_constructors (opengate.managers.PhysicsListManager attribute) available_processing_units (in module opengate.postprocessors) averaging_method (opengate.actors.doseactors.LETActor attribute)

B

BaseUserInterfaceToActorOutput (class in opengate.actors.actoroutput) batch (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) batch_nb (opengate.actors.arfactors.ARFActor attribute) batch_size (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) Bcolors (class in opengate.uisessions) beam_angles (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) beam_names (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) beam_numbers (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) beamFraction (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) BeamInfo (class in opengate.contrib.tps.ionbeamtherapy) beamline_model (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) BeamlineModel (class in opengate.contrib.beamlines.ionbeamline) beams (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) BeamsetInfo (class in opengate.contrib.tps.ionbeamtherapy) BeginOfRunAction() (opengate.actions.RunAction method) BeginOfRunAction_actors (opengate.actions.RunAction attribute) BeginOfRunActionMasterThread() (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.dynamicactors.DynamicGeometryActor method) belongs_to (opengate.actors.actoroutput.ActorOutputBase attribute) (opengate.actors.dataitems.DataContainer attribute) belongs_to_actor (opengate.actors.actoroutput.ActorOutputBase property) (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput attribute) bias_only_once (opengate.actors.miscactors.SplittingActorBase attribute) bias_primary_only (opengate.actors.miscactors.SplittingActorBase attribute) blue (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr) (in module opengate.contrib.phantoms.nemaiec) (in module opengate.contrib.spect.siemens_intevo)

BOLD (opengate.uisessions.Bcolors attribute) bool_leaf_x_neg() (in module opengate.contrib.linacs.elektaversa) bool_leaf_x_pos() (in module opengate.contrib.linacs.elektaversa) BooleanSolid (class in opengate.geometry.solids) BooleanVolume (class in opengate.geometry.volumes) bounding_box_size (opengate.geometry.solids.SolidBase property) bounding_limits (opengate.geometry.solids.SolidBase property) box_add_size() (in module opengate.geometry.utility) BoxSolid (class in opengate.geometry.solids) BoxVolume (class in opengate.geometry.volumes) Bq (in module siemensciosalpha) BremSplittingActor (class in opengate.actors.miscactors) bs_attrs (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) bs_info (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) Build() (opengate.engines.ActionEngine method) build() (opengate.geometry.materials.ElementBuilder method) (opengate.geometry.materials.MaterialBuilder method) build_extension() (setup.CMakeBuild method) build_solid() (opengate.geometry.solids.BooleanSolid method) (opengate.geometry.solids.BoxSolid method) (opengate.geometry.solids.ConsSolid method) (opengate.geometry.solids.HexagonSolid method) (opengate.geometry.solids.PolyhedraSolid method) (opengate.geometry.solids.SphereSolid method) (opengate.geometry.solids.TesselatedSolid method) (opengate.geometry.solids.TrapSolid method) (opengate.geometry.solids.TrdSolid method) (opengate.geometry.solids.TubsSolid method) BuildForMaster() (opengate.engines.ActionEngine method)

C

C11 module calculate_variance() (in module opengate.utility) can_be_initial_unit (opengate.postprocessors.datafetchers.DataFetcherBase property) (opengate.postprocessors.unitbase.ProcessingUnitBase property) can_predict_expected_number_of_event() (opengate.engines.SourceEngine method) can_predict_number_of_events() (opengate.sources.generic.GenericSource method) (opengate.sources.generic.SourceBase method) channels (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor attribute) check_channel_overlap() (in module opengate.actors.arfactors) check_confine() (opengate.sources.generic.GenericSource method) check_diff() (in module opengate.tests.utility) check_diff_abs() (in module opengate.tests.utility) check_dose_grid_geometry() (in module opengate.tests.utility) check_energy_window_actor() (opengate.actors.arfactors.ARFTrainingDatasetActor method) check_for_non_required_files_folders() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) check_g4_data() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) check_overlaps() (opengate.engines.VolumeEngine method) check_parameters() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) check_plan_tag() (in module opengate.contrib.tps.ionbeamtherapy) check_production_cuts() (in module opengate.userhooks) check_property() (in module opengate.base) check_property_name() (in module opengate.base) check_tests_data_folder() (in module opengate_core.testsDataSetup) check_ui_activity() (opengate.sources.generic.GenericSource method) check_user_info() (in module opengate.userelement) check_user_input() (opengate.actors.doseactors.VoxelDepositActor method) check_volumes_overlap (opengate.managers.Simulation attribute) (opengate.Simulation attribute) check_volumes_overlap() (opengate.engines.SimulationEngine method) children_volumes (opengate.geometry.volumes.VolumeBase property) Ciosalpha (class in siemensciosalpha) close() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.base.ActorBase method) (opengate.actors.dynamicactors.DynamicGeometryActor method) (opengate.actors.dynamicactors.VolumeRotationChanger method) (opengate.actors.dynamicactors.VolumeTranslationChanger method) (opengate.base.GateObject method) (opengate.engines.ActionEngine method) (opengate.engines.ActorEngine method) (opengate.engines.EngineBase method) (opengate.engines.FilterEngine method) (opengate.engines.ParallelWorldEngine method) (opengate.engines.PhysicsEngine method) (opengate.engines.SimulationEngine method) (opengate.engines.SourceEngine method) (opengate.engines.VisualisationEngine method) (opengate.engines.VolumeEngine method) (opengate.geometry.solids.ImageSolid method) (opengate.geometry.solids.SolidBase method) (opengate.geometry.solids.TesselatedSolid method) (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.ParallelWorldVolume method) (opengate.geometry.volumes.RepeatParametrisedVolume method) (opengate.geometry.volumes.VolumeBase method) (opengate.physics.OpticalSurface method) (opengate.physics.Region method) (opengate.physics.UserLimitsPhysics method) (opengate.postprocessors.base.PostProcessor method) (opengate.postprocessors.base.ProcessingGroupBase method) (opengate.postprocessors.datafetchers.DataFetcherBase method) (opengate.postprocessors.unitbase.ProcessingUnitBase method) close_engines() (opengate.engines.SimulationEngine method) close_physics_constructors() (opengate.engines.PhysicsEngine method) clsmembers (in module opengate.postprocessors) cm (in module siemensciosalpha) CMakeBuild (class in setup) CMakeExtension (class in setup) coincidences_sorter() (in module opengate.actors.coincidences) collect_data() (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) collimation (siemensciosalpha.Ciosalpha property) color_error (in module opengate.exception) (in module opengate_core.testsDataSetup) color_ok (in module opengate.exception) color_warning (in module opengate.exception) compare_branches() (in module opengate.tests.utility) compare_branches_values() (in module opengate.tests.utility) compare_dose_at_points() (in module opengate.tests.utility) compare_itk_image() (in module opengate.image) compare_itk_image_content() (in module opengate.image) compare_itk_image_info() (in module opengate.image) compare_root() (in module opengate.tests.utility) compare_root2() (in module opengate.tests.utility) compare_root3() (in module opengate.tests.utility) compare_root4() (in module opengate.tests.utility) compare_trees() (in module opengate.tests.utility) compare_trees4() (in module opengate.tests.utility) compareGaussParamArrays() (in module opengate.tests.utility) compareGaussParamFromFile() (in module opengate.tests.utility) compareRange() (in module opengate.tests.utility) components (opengate.geometry.materials.MaterialBuilder attribute) ComptSplittingActor (class in opengate.actors.miscactors) compute_bins_density() (in module opengate.sources.generic) compute_cdf_and_total_yield() (in module opengate.sources.generic) compute_directions (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) compute_dose_from_edep_img() (opengate.actors.doseactors.DoseActor method) compute_image_3D_CDF() (in module opengate.image) compute_plane_position_and_distance_to_crystal() (in module opengate.contrib.spect.ge_discovery_nm670) (in module opengate.contrib.spect.siemens_intevo) compute_positions() (in module opengate.bin.ideal_timed_spect_reconstruction) compute_sphere_activity() (in module opengate.contrib.phantoms.nemaiec) compute_sphere_centers_and_volumes() (in module opengate.contrib.phantoms.nemaiec) compute_std_from_sample() (in module opengate.actors.doseactors) compute_thickness() (opengate.actors.digitizers.DigitizerProjectionActor method) compute_total_spheres_activity() (in module opengate.contrib.phantoms.nemaiec) cons_add_size() (in module opengate.geometry.utility) ConsSolid (class in opengate.geometry.solids)

Construct() (opengate.engines.ParallelWorldEngine method) (opengate.engines.VolumeEngine method) construct() (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.ParallelWorldVolume method) (opengate.geometry.volumes.RepeatParametrisedVolume method) (opengate.geometry.volumes.VolumeBase method) construct_logical_volume() (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.VolumeBase method) construct_material() (opengate.geometry.volumes.VolumeBase method) construct_physical_volume() (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.RepeatableVolume method) (opengate.geometry.volumes.RepeatParametrisedVolume method) (opengate.geometry.volumes.VolumeBase method) construct_solid() (opengate.geometry.solids.ImageSolid method) (opengate.geometry.solids.SolidBase method) constructor_functions (opengate.geometry.solids.BooleanSolid attribute) ConstructParticle() (opengate.physics.UserLimitsPhysics method) ConstructProcess() (opengate.physics.UserLimitsPhysics method) ConstructSD() (opengate.engines.ParallelWorldEngine method) ConstructSDandField() (opengate.engines.VolumeEngine method) ConsVolume (class in opengate.geometry.volumes) CONTEXT_SETTINGS (in module opengate.bin.dose_rate) (in module opengate.bin.ideal_timed_spect_reconstruction) (in module opengate.bin.opengate_library_path) (in module opengate.bin.opengate_tests) (in module opengate.bin.opengate_tests_utils) (in module opengate.bin.opengate_user_info) (in module opengate.bin.opengate_visu) (in module opengate.bin.phid_atomic_relaxation) (in module opengate.bin.phid_gammas) (in module opengate.bin.phid_info) (in module opengate.bin.phid_isomeric_transition) (in module opengate.bin.phid_tac) (in module opengate.bin.split_spect_projections) (in module opengate.bin.voxelize_iec_phantom) conv_x (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) conv_y (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) copy_from() (opengate.userinfo.UserInfo method) copy_generated_particle_to_g4() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) copy_image_properties() (opengate.actors.dataitems.ItkImageDataItem method) copy_input_files() (opengate.managers.Simulation method) (opengate.Simulation method) copy_tree_for_dump() (in module opengate.actors.coincidences) copy_user_info() (opengate.base.GateObject method) counts (opengate.actors.miscactors.SimulationStatisticsActor property) create_2D_Edep_colorMap() (in module opengate.tests.utility) create_3d_image() (in module opengate.image) create_changers() (opengate.base.DynamicGateObject method) (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.VolumeBase method) create_density_image() (opengate.geometry.volumes.ImageVolume method) create_density_img() (in module opengate.geometry.materials) create_empty_image() (opengate.actors.actoroutput.ActorOutputImage method) (opengate.actors.dataitems.ItkImageDataItem method) create_external_link() (opengate.postprocessors.base.PostProcessor method) create_filter() (opengate.managers.FilterManager method) create_g4_optical_properties_table() (in module opengate.physics) create_g4_source() (opengate.sources.beamsources.IonPencilBeamSource method) (opengate.sources.beamsources.TreatmentPlanPBSource method) (opengate.sources.gansources.GANPairsSource method) (opengate.sources.gansources.GANSource method) (opengate.sources.generic.GenericSource method) (opengate.sources.generic.SourceBase method) (opengate.sources.generic.TemplateSource method) (opengate.sources.phidsources.PhotonFromIonDecaySource method) (opengate.sources.phspsources.PhaseSpaceSource method) (opengate.sources.voxelsources.VoxelsSource method) create_g4_source_manager() (opengate.engines.SourceEngine method) create_gate_object_from_dict() (in module opengate.base) create_hard_links_to_nodes_in_group() (in module opengate.postprocessors.utility) create_image_like() (in module opengate.image) create_image_like_info() (in module opengate.image) create_image_parametrisation() (opengate.geometry.volumes.ImageVolume method) create_image_with_extent() (in module opengate.image) create_image_with_volume_extent() (in module opengate.image) create_label_image() (opengate.geometry.volumes.ImageVolume method) create_mass_img() (in module opengate.geometry.materials) create_master_source_manager() (opengate.engines.SourceEngine method) create_material() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.phantoms.nemaiec) create_material_to_label_lut() (opengate.geometry.volumes.ImageVolume method) create_modular_physics_list_class() (in module opengate.managers) create_parallel_world_engines() (opengate.engines.VolumeEngine method) create_physics_list_classes() (opengate.managers.PhysicsListManager method) create_position_vector() (in module opengate.tests.utility) create_projection_from_positions() (in module opengate.postprocessors.image) create_repeat_parametrisation() (opengate.geometry.volumes.RepeatParametrisedVolume method) create_run_manager() (opengate.engines.SimulationEngine method) create_sim_from_json() (in module opengate) (in module opengate.managers) create_simu_for_arf_training_dataset() (in module opengate.contrib.spect.siemens_intevo) create_simulation() (in module opengate.contrib.dose.doserate) create_volume() (opengate.managers.VolumeManager method) created_physics_list_classes (opengate.managers.PhysicsListManager attribute) cumulative_distribution_functions() (opengate.sources.voxelsources.VoxelsSource method) current_filename (opengate.geometry.materials.MaterialDatabase attribute) current_index (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) current_path (in module siemensciosalpha) current_random_seed (opengate.engines.SimulationEngine attribute) (opengate.engines.SimulationOutput attribute) (opengate.managers.Simulation property) (opengate.Simulation property) current_run_interval (opengate.engines.SourceEngine attribute) (opengate.managers.SourceManager attribute) current_section (opengate.geometry.materials.MaterialDatabase attribute) current_thread_id (opengate.sources.generic.SourceBase attribute) current_visu_filename (opengate.engines.VisualisationEngine attribute) cut_particle_names (in module opengate.physics) cycle_count (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute)

D

data (opengate.actors.dataitems.DataDictionary attribute) (opengate.actors.dataitems.DataItem attribute) (opengate.actors.dataitems.DataItemContainer attribute) data_container_class (opengate.actors.actoroutput.ActorOutputQuotientImage attribute) (opengate.actors.actoroutput.ActorOutputQuotientMeanImage attribute) (opengate.actors.actoroutput.ActorOutputSingleImage attribute) (opengate.actors.actoroutput.ActorOutputSingleImageWithVariance attribute) (opengate.actors.actoroutput.ActorOutputSingleMeanImage attribute) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer attribute) data_is_none (opengate.actors.dataitems.DataItem property) (opengate.actors.dataitems.DataItemContainer property) data_item_config (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer attribute) (opengate.actors.dataitems.DataItemContainer property) data_packages (in module opengate_core), [1] (in module opengate_core.g4DataSetup) data_per_run (opengate.actors.actoroutput.ActorOutputBase attribute) DataContainer (class in opengate.actors.dataitems) DataDictionary (class in opengate.actors.dataitems) DataFetcherBase (class in opengate.postprocessors.datafetchers) DataFetcherHdf5 (class in opengate.postprocessors.datafetchers) DataFetcherWithFileHandle (class in opengate.postprocessors.datafetchers) DataItem (class in opengate.actors.dataitems) DataItemContainer (class in opengate.actors.dataitems) daughters (opengate.sources.phidsources.PhotonFromIonDecaySource attribute) DD() (in module opengate.utility) DDF() (in module opengate.utility) DEBUG (in module opengate.logger) debug_nb_hits (opengate.actors.arfactors.ARFActor attribute) debug_nb_hits_before (opengate.actors.arfactors.ARFActor attribute) default() (opengate.serialization.GateJSONEncoder method) default_data_item_config (opengate.actors.dataitems.QuotientItkImage attribute) (opengate.actors.dataitems.SingleItkImageWithVariance attribute) default_suffix (opengate.actors.actoroutput.ActorOutputBase attribute) (opengate.actors.actoroutput.ActorOutputImage attribute) (opengate.actors.actoroutput.ActorOutputRoot attribute) (opengate.actors.miscactors.ActorOutputStatisticsActor attribute) define_pos_mlc_jaws_rectangular_field() (in module opengate.contrib.linacs.elektaversa) deg (in module siemensciosalpha) density (opengate.geometry.materials.MaterialBuilder attribute) detected_particles (opengate.actors.arfactors.ARFActor attribute) detector_orientation_matrix (opengate.actors.digitizers.DigitizerProjectionActor attribute) dict_compare() (in module opengate.tests.utility) digest_user_info_defaults() (in module opengate.base) Digitizer (class in opengate.actors.digitizers) DigitizerAdderActor (class in opengate.actors.digitizers) DigitizerBase (class in opengate.actors.digitizers) DigitizerBlurringActor (class in opengate.actors.digitizers) DigitizerEfficiencyActor (class in opengate.actors.digitizers) DigitizerEnergyWindowsActor (class in opengate.actors.digitizers) DigitizerHitsCollectionActor (class in opengate.actors.digitizers) DigitizerProjectionActor (class in opengate.actors.digitizers) DigitizerReadoutActor (class in opengate.actors.digitizers)

DigitizerSpatialBlurringActor (class in opengate.actors.digitizers) direction_key_x (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) direction_key_y (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) direction_key_z (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) dispatch_to_subprocess() (in module opengate.processing) distance_nozzle_iso (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) distance_source_to_isocenter (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) distance_stearmag_to_isocenter_x (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) distance_stearmag_to_isocenter_y (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) distance_to_center_of_crystal() (in module opengate.contrib.spect.ge_discovery_nm670) divide_itk_images() (in module opengate.image) do_your_job() (opengate.postprocessors.datafetchers.DataFetcherHdf5 method) (opengate.postprocessors.image.ProjectionListMode method) (opengate.postprocessors.listmode.GaussianBlurringSingleAttribute method) (opengate.postprocessors.listmode.OffsetSingleAttribute method) (opengate.postprocessors.sequences.ProcessingSequence method) (opengate.postprocessors.unitbase.ProcessingUnitBase method) DoseActor (class in opengate.actors.doseactors) DoubleArray (class in opengate.actors.dataitems) download_g4_data() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) download_tests_data() (in module opengate_core.testsDataSetup) download_with_resume() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) dump() (opengate.managers.FilterManager method) (opengate.sources.generic.SourceBase method) dump_actor_types() (opengate.managers.ActorManager method) dump_actors() (opengate.managers.ActorManager method) dump_available_physics_lists() (opengate.managers.PhysicsManager method) dump_bg_activity() (in module opengate.contrib.phantoms.nemaiec) dump_build_materials() (opengate.engines.VolumeEngine method) dump_info_physics_lists() (opengate.managers.PhysicsListManager method) (opengate.managers.PhysicsManager method) dump_json() (in module opengate.serialization) dump_material_database_names() (opengate.managers.VolumeManager method) dump_material_like_Gate() (in module opengate.geometry.materials) dump_optical_surfaces() (opengate.managers.PhysicsManager method) dump_production_cuts() (opengate.managers.PhysicsManager method) (opengate.physics.Region method) dump_source_types() (opengate.managers.SourceManager method) dump_sources() (opengate.managers.SourceManager method) dump_spheres_activity() (in module opengate.contrib.phantoms.nemaiec) dump_volume_tree() (opengate.managers.VolumeManager method) dump_volume_types() (opengate.managers.VolumeManager method) dump_volumes() (opengate.managers.VolumeManager method) dumps_json() (in module opengate.serialization) dynamic_params (opengate.base.DynamicGateObject attribute) dynamic_user_info (opengate.base.DynamicGateObject property) dynamic_volumes (opengate.managers.VolumeManager property) DynamicGateObject (class in opengate.base) DynamicGeometryActor (class in opengate.actors.dynamicactors)

E

element_builders (in module opengate.element) (opengate.geometry.materials.MaterialDatabase attribute) element_builders_by_filename (opengate.geometry.materials.MaterialDatabase attribute) element_type (opengate.userinfo.UserInfo attribute) ElementBuilder (class in opengate.geometry.materials) elements_name_symbol (in module opengate.definitions) enable_brem_splitting() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) enable_decay (opengate.managers.PhysicsManager property) encoder (opengate.actors.miscactors.ActorOutputStatisticsActor attribute) end_of_run() (opengate.actors.actoroutput.MergeableActorOutput method) end_of_simulation() (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) (opengate.actors.actoroutput.MergeableActorOutput method) ENDC (opengate.uisessions.Bcolors attribute) EndOfRunAction() (opengate.actions.RunAction method) EndOfRunAction_actors (opengate.actions.RunAction attribute) EndOfRunActionMasterThread() (opengate.actors.arfactors.ARFActor method) (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.doseactors.VoxelDepositActor method) EndSimulationAction() (opengate.actors.arfactors.ARFActor method) (opengate.actors.arfactors.ARFTrainingDatasetActor method) (opengate.actors.base.ActorBase method) (opengate.actors.digitizers.DigitizerAdderActor method) (opengate.actors.digitizers.DigitizerBlurringActor method) (opengate.actors.digitizers.DigitizerEfficiencyActor method) (opengate.actors.digitizers.DigitizerEnergyWindowsActor method) (opengate.actors.digitizers.DigitizerHitsCollectionActor method) (opengate.actors.digitizers.DigitizerProjectionActor method) (opengate.actors.digitizers.DigitizerReadoutActor method) (opengate.actors.digitizers.DigitizerSpatialBlurringActor method) (opengate.actors.digitizers.PhaseSpaceActor method) (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.doseactors.VoxelDepositActor method) (opengate.actors.miscactors.KillActor method) (opengate.actors.miscactors.SimulationStatisticsActor method)

ene_win_down_scatter() (in module opengate.actors.digitizers) ene_win_peak() (in module opengate.actors.digitizers) ene_win_up_scatter() (in module opengate.actors.digitizers) energy (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) energy_key (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) energy_max (opengate.actors.filters.KineticEnergyFilter attribute) energy_mean_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) energy_min (opengate.actors.filters.KineticEnergyFilter attribute) energy_spread_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) energy_windows_peak_scatter() (in module opengate.actors.digitizers) EngineBase (class in opengate.engines) ensure_directory_exists() (in module opengate.utility) ensure_filename_is_str() (in module opengate.utility) ensure_is_g4_rotation() (in module opengate.geometry.utility) ensure_is_g4_transform() (in module opengate.geometry.utility) ensure_is_g4_translation() (in module opengate.geometry.utility) entry_start (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) epsilon_x_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) epsilon_y_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) EVENT (in module opengate.logger) ExceptionHandler (class in opengate.exception) expected_number_of_events (opengate.engines.SourceEngine attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) exponential_func() (in module opengate.tests.utility) extfile (opengate.postprocessors.base.ManagedExternalLink property) extra_file_handles (opengate.postprocessors.base.PostProcessor attribute) extract() (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor method) extract_dataset() (in module opengate.contrib.linacs.dicomrtplan) extract_gauss_param_1D() (in module opengate.tests.utility)

F

F18 module FAIL (opengate.uisessions.Bcolors attribute) fatal() (in module opengate.exception) (opengate.sources.gansources.GANSourceDefaultGenerator method) fetch_from_cpp_image() (opengate.actors.doseactors.VoxelDepositActor method) field() (in module opengate.contrib.linacs.elektaversa) fields (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) filenames (opengate.geometry.materials.MaterialDatabase attribute) filter_builders (in module opengate.actors.builders) filter_classes (in module opengate.actors.filters) filter_engine (opengate.engines.SimulationEngine attribute) filter_manager (opengate.engines.FilterEngine property) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) filter_nodes() (in module opengate.postprocessors.utility) filter_type_names (in module opengate.actors.builders) FilterBase (class in opengate.actors.filters) FilterEngine (class in opengate.engines) FilterManager (class in opengate.managers) filters (opengate.actors.base.ActorBase attribute) (opengate.managers.FilterManager attribute) filters_boolean_operator (opengate.actors.base.ActorBase attribute) FinalCumulativeMetersetWeight (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) finalizers (opengate.managers.PostProcessingManager attribute) find_all_gate_objects() (in module opengate.base) find_all_paths() (in module opengate.base) find_first_module() (opengate.actors.digitizers.Digitizer method)

find_or_build_material() (opengate.managers.VolumeManager method) find_or_create_region() (opengate.managers.PhysicsManager method) find_paths_in_gate_object_dictionary() (in module opengate.base) FindOrBuildElement() (opengate.geometry.materials.MaterialDatabase method) FindOrBuildMaterial() (opengate.geometry.materials.MaterialDatabase method) fit_exponential_decay() (in module opengate.tests.utility) flatten() (opengate.sources.phidsources.NumpyArrayHandler method) FLOAT_MAX (in module opengate.definitions) FluenceActor (class in opengate.actors.doseactors) force_multithread_mode (opengate.managers.Simulation attribute) (opengate.Simulation attribute) formatter (in module opengate.logger) from_dictionary() (opengate.actors.base.ActorBase method) (opengate.base.GateObject method) (opengate.geometry.solids.BooleanSolid method) (opengate.managers.ActorManager method) (opengate.managers.PhysicsManager method) (opengate.managers.Simulation method) (opengate.managers.VolumeManager method) (opengate.physics.Region method) (opengate.Simulation method) from_json_file() (opengate.managers.Simulation method) (opengate.Simulation method) from_json_string() (opengate.managers.Simulation method) (opengate.Simulation method) fTotalSkippedEvents (opengate.sources.generic.GenericSource attribute) fTotalZeroEvents (opengate.sources.generic.GenericSource attribute) fwhm_to_sigma (in module opengate.definitions)

G

g4_best_unit() (in module opengate.utility) g4_best_unit_tuple() (in module opengate.utility) g4_commands_after_init (opengate.managers.Simulation attribute) (opengate.Simulation attribute) g4_commands_before_init (opengate.managers.Simulation attribute) (opengate.Simulation attribute) g4_cuts_by_regions (opengate.engines.PhysicsEngine attribute) g4_decay (opengate.engines.PhysicsEngine attribute) g4_elements (opengate.geometry.materials.MaterialDatabase attribute) g4_em_parameters (opengate.engines.PhysicsEngine attribute) g4_EventAction (opengate.engines.ActionEngine attribute) g4_exception_handler (opengate.engines.SimulationEngine attribute) g4_HepRandomEngine (opengate.engines.SimulationEngine attribute) g4_logical_border_surface (opengate.physics.OpticalSurface attribute) g4_logical_volume (opengate.geometry.volumes.VolumeBase attribute) g4_logical_x (opengate.geometry.volumes.ImageVolume attribute) g4_logical_y (opengate.geometry.volumes.ImageVolume attribute) g4_logical_z (opengate.geometry.volumes.ImageVolume attribute) g4_main_PrimaryGenerator (opengate.engines.ActionEngine attribute) g4_master_source_manager (opengate.engines.SourceEngine attribute) g4_material (opengate.geometry.volumes.VolumeBase attribute) g4_materials (opengate.geometry.materials.MaterialDatabase attribute) g4_NistManager (opengate.geometry.materials.MaterialDatabase attribute) g4_optical_material_tables (opengate.engines.PhysicsEngine attribute) g4_optical_surface (opengate.physics.OpticalSurface attribute) g4_optical_surface_table (opengate.physics.OpticalSurface attribute) g4_parallel_world_physics (opengate.engines.PhysicsEngine attribute) g4_physical_volume (opengate.actors.dynamicactors.VolumeRotationChanger attribute) (opengate.actors.dynamicactors.VolumeTranslationChanger attribute) (opengate.geometry.volumes.VolumeBase property) g4_physical_volumes (opengate.engines.PhysicsEngine attribute) (opengate.geometry.volumes.VolumeBase attribute) g4_physical_x (opengate.geometry.volumes.ImageVolume attribute) g4_physical_y (opengate.geometry.volumes.ImageVolume attribute) g4_physical_z (opengate.geometry.volumes.ImageVolume attribute) g4_physics_list (opengate.engines.PhysicsEngine attribute) g4_PrimaryGenerator (opengate.engines.ActionEngine attribute) g4_production_cuts (opengate.physics.Region attribute) g4_radioactive_decay (opengate.engines.PhysicsEngine attribute) g4_region (opengate.geometry.volumes.VolumeBase property) (opengate.physics.Region attribute) g4_repeat_parametrisation (opengate.geometry.volumes.RepeatParametrisedVolume attribute) g4_rotation (opengate.geometry.volumes.VolumeBase property) g4_rotations (opengate.actors.dynamicactors.VolumeRotationChanger attribute) g4_RunAction (opengate.engines.ActionEngine attribute) g4_RunManager (opengate.engines.SimulationEngine attribute) g4_solid (opengate.geometry.solids.SolidBase attribute) g4_solid_x (opengate.geometry.solids.ImageSolid attribute) g4_solid_y (opengate.geometry.solids.ImageSolid attribute) g4_solid_z (opengate.geometry.solids.ImageSolid attribute) g4_source (opengate.sources.generic.SourceBase attribute) g4_special_user_cuts_storage (opengate.physics.UserLimitsPhysics attribute) g4_state (opengate.engines.SimulationEngine property) g4_StateManager (opengate.engines.SimulationEngine attribute) g4_step_limiter_storage (opengate.physics.UserLimitsPhysics attribute) g4_sub_sources (opengate.sources.phidsources.PhotonFromIonDecaySource attribute) g4_surface_properties (opengate.engines.PhysicsEngine attribute) g4_thread_source_managers (opengate.engines.SourceEngine attribute) g4_TrackingAction (opengate.engines.ActionEngine attribute) g4_transform (opengate.geometry.volumes.VolumeBase property) g4_translation (opengate.geometry.volumes.VolumeBase property) g4_translations (opengate.actors.dynamicactors.VolumeTranslationChanger attribute) g4_ui (opengate.engines.SimulationEngine attribute) g4_ui_session (opengate.engines.SimulationEngine attribute) g4_units (in module opengate) (in module opengate.utility) g4_user_limits (opengate.physics.Region attribute) g4_verbose (opengate.managers.Simulation attribute) (opengate.Simulation attribute) g4_verbose_level (opengate.managers.Simulation attribute) (opengate.Simulation attribute) g4_verbose_level_tracking (opengate.managers.Simulation attribute) (opengate.Simulation attribute) g4_vis_attributes (opengate.geometry.volumes.VolumeBase attribute) g4_vis_executive (opengate.engines.VisualisationEngine attribute) g4_voxel_param (opengate.geometry.volumes.ImageVolume attribute) g4_world_log_vol (opengate.geometry.volumes.ParallelWorldVolume attribute) (opengate.geometry.volumes.VolumeBase attribute) g4_world_phys_vol (opengate.geometry.volumes.ParallelWorldVolume attribute) Ga68 module gaga (in module opengate.sources.gansources) gammas (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor attribute) gan_info (opengate.sources.gansources.GANSourceDefaultGenerator attribute) GANPairsSource (class in opengate.sources.gansources) GANSource (class in opengate.sources.gansources) GANSourceConditionalGenerator (class in opengate.sources.gansources) GANSourceConditionalPairsGenerator (class in opengate.sources.gansources) GANSourceDefaultGenerator (class in opengate.sources.gansources) GANSourceDefaultPairsGenerator (class in opengate.sources.gansources) gantry_angle (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) garf (in module opengate.actors.arfactors) gate_physics_constructors (opengate.engines.PhysicsEngine attribute) gate_source_path (in module opengate.sources.generic) GateDeprecationError GateFeatureUnavailableError GateImplementationError GateJSONEncoder (class in opengate.serialization) GateObject (class in opengate.base) GateSingletonFatal (class in opengate.base) GateUserInputSwitchDict (class in opengate.base) gauss_func() (in module opengate.tests.utility) gaussian_fit() (in module opengate.tests.utility) GaussianBlurringSingleAttribute (class in opengate.postprocessors.listmode) generate() (opengate.sources.phspsources.PhaseSpaceSourceGenerator method) generate_condition (opengate.sources.gansources.GANSourceConditionalGenerator attribute) (opengate.sources.gansources.GANSourceConditionalPairsGenerator attribute) generate_condition() (opengate.sources.gansources.VoxelizedSourceConditionGenerator method) generate_isotropic_directions() (in module opengate.sources.generic) generate_pos_dir_one_sphere() (in module opengate.contrib.phantoms.nemaiec) generate_pos_dir_spheres() (in module opengate.contrib.phantoms.nemaiec) generate_pos_one_sphere() (in module opengate.contrib.phantoms.nemaiec) generate_pos_spheres() (in module opengate.contrib.phantoms.nemaiec) generate_until_next_primary (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) generator() (opengate.sources.gansources.GANSourceConditionalGenerator method) (opengate.sources.gansources.GANSourceConditionalPairsGenerator method) (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) GenericSource (class in opengate.sources.generic) geometry_changers (opengate.actors.dynamicactors.DynamicGeometryActor attribute) GeometryChanger (class in opengate.actors.dynamicactors) get_1D_profile() (in module opengate.tests.utility) get_active() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) get_actor() (opengate.engines.SimulationOutput method) (opengate.managers.ActorManager method) (opengate.managers.Simulation method) (opengate.Simulation method) get_actor_user_info() (opengate.managers.ActorManager method) (opengate.managers.Simulation method) (opengate.Simulation method) get_base_dir() (in module setup) get_biasing_particles_and_processes() (opengate.managers.PhysicsManager method) get_branch() (in module opengate.tests.utility) get_builder() (in module opengate.element) get_circular_repetition() (in module opengate.geometry.utility) get_cmake_dir() (in module setup) get_collimator() (in module opengate.contrib.spect.ge_discovery_nm670) get_contrib_path() (in module opengate.utility) get_create_function() (in module opengate.postprocessors.utility) get_data() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) (opengate.actors.base.ActorBase method) (opengate.actors.dataitems.DataItemContainer method) (opengate.actors.miscactors.ActorOutputStatisticsActor method) get_data_container() (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) get_data_folder() (in module opengate.utility) get_data_item_object() (opengate.actors.dataitems.DataItemContainer method) get_database_material_names() (opengate.engines.VolumeEngine method) (opengate.geometry.materials.MaterialDatabase method) get_default_data_item_config() (opengate.actors.dataitems.DataItemContainer class method) get_default_interface_class() (opengate.actors.actoroutput.ActorOutputBase class method) get_default_sphere_centers_and_volumes() (in module opengate.contrib.phantoms.nemaiec) get_default_sphere_centers_and_volumes_old() (in module opengate.contrib.phantoms.nemaiec) get_default_test_paths() (in module opengate.tests.utility) get_direction_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) get_element_class() (in module opengate.element) get_energy() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_energy_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) get_entry_start() (opengate.sources.phspsources.PhaseSpaceSourceGenerator method) get_enum_values() (in module opengate.physics) get_epsilon_x() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_epsilon_y() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_extra_file_handle() (opengate.postprocessors.base.PostProcessor method)

get_filter() (opengate.managers.FilterManager method) get_filter_class() (in module opengate.actors.filters) get_g4_data_folder() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) get_g4_data_paths() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) get_g4_physical_volume() (opengate.geometry.volumes.VolumeBase method) get_gan_key_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) get_gate_folder() (in module opengate.utility) get_gauss_param_xy() (in module opengate.tests.utility) get_generated_primaries() (opengate.sources.beamsources.TreatmentPlanPBSource method) get_gpu_mode_for_tests() (in module opengate.tests.utility) get_grid_repetition() (in module opengate.geometry.utility) get_group_name() (in module opengate.postprocessors.utility) get_image_center() (in module opengate.image) get_image_properties() (opengate.actors.actoroutput.ActorOutputImage method) (opengate.actors.dataitems.ItkImageDataItem method) get_info_from_image() (in module opengate.image) get_input_data() (opengate.postprocessors.image.ProjectionListMode method) get_ions_generated_per_spot() (in module opengate.userhooks) get_item_suffix() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) get_keys_correspondence() (in module opengate.tests.utility) get_last_module() (opengate.actors.digitizers.Digitizer method) get_libG4_path() (in module opengate_core) get_libG4geometry_path() (in module opengate.bin.opengate_library_path) (in module opengate.bin.opengate_tests_utils) get_libG4processes_path() (in module opengate.bin.opengate_library_path) (in module opengate.bin.opengate_tests_utils) get_material_name_variants() (in module opengate.utility) get_missing_g4_data() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) get_msw() (opengate.contrib.tps.ionbeamtherapy.SpotInfo method) get_n_samples_from_ratio() (in module opengate.contrib.phantoms.nemaiec) get_new_key_name() (in module opengate.tests.utility) get_node_name() (in module opengate.postprocessors.utility) get_node_path() (in module opengate.postprocessors.utility) get_nodes_in_group() (in module opengate.postprocessors.utility) get_nuclide_and_direct_progeny() (in module opengate.sources.phidsources) get_nuclide_from_name() (in module opengate.sources.phidsources) get_nuclide_progeny() (in module opengate.sources.phidsources) get_or_create_output_array() (opengate.postprocessors.unitbase.ProcessingUnitBase method) get_or_create_output_carray() (opengate.postprocessors.unitbase.ProcessingUnitBase method) get_or_create_output_earray() (opengate.postprocessors.unitbase.ProcessingUnitBase method) get_or_create_output_group() (opengate.postprocessors.unitbase.ProcessingUnitBase method) get_or_create_output_table() (opengate.postprocessors.unitbase.ProcessingUnitBase method) get_or_register_extra_file_handle() (opengate.postprocessors.base.PostProcessor method) get_orientation_for_ct() (in module opengate.contrib.spect.ge_discovery_nm670) get_origin_wrt_images_g4_position() (in module opengate.image) get_output_filename() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) get_output_groups() (opengate.postprocessors.base.ProcessingGroupBase method) get_output_keys() (opengate.sources.gansources.GANSourceDefaultGenerator method) get_output_keys_with_lock() (opengate.sources.gansources.GANSourceDefaultGenerator method) get_output_path() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputRoot method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput method) (opengate.actors.base.ActorBase method) (opengate.managers.Simulation method) (opengate.Simulation method) get_output_path_as_string() (opengate.actors.actoroutput.ActorOutputBase method) get_output_path_for_item() (opengate.actors.base.ActorBase method) get_output_path_for_item_string() (opengate.actors.base.ActorBase method) get_output_path_string() (opengate.actors.base.ActorBase method) get_parent() (in module opengate.postprocessors.utility) get_physical_volume_name() (opengate.actors.doseactors.VoxelDepositActor method) get_physics_list() (opengate.managers.PhysicsListManager method) get_plane_position_and_distance_to_crystal() (in module opengate.contrib.spect.ge_discovery_nm670) (in module opengate.contrib.spect.siemens_intevo) get_position_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) get_processed_output() (opengate.actors.miscactors.ActorOutputStatisticsActor method) get_processing_unit() (opengate.postprocessors.base.ProcessingGroupBase method) get_py_image_from_cpp_image() (in module opengate.image) get_rad_gamma_energy_spectrum() (in module opengate.sources.generic) get_rad_yield() (in module opengate.sources.generic) get_random_folder_name() (in module opengate.utility) get_range_from_image() (in module opengate.tests.utility) get_release_date() (in module opengate.utility) get_repetition_index_from_name() (opengate.geometry.volumes.RepeatableVolume method) get_repetition_name_from_index() (opengate.geometry.volumes.RepeatableVolume method) get_rnd_seed() (in module opengate.utility) get_sigma_energy() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_sigma_x() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_sigma_y() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_simplified_digitizer_channels_I131() (in module opengate.actors.digitizers) get_simplified_digitizer_channels_In111() (in module opengate.actors.digitizers) get_simplified_digitizer_channels_Lu177() (in module opengate.actors.digitizers) get_simplified_digitizer_channels_rad() (in module opengate.actors.digitizers) get_simplified_digitizer_channels_Tc99m() (in module opengate.actors.digitizers) get_site_packages_dir() (in module opengate.bin.opengate_library_path) (in module opengate.bin.opengate_tests_utils) (in module opengate_core) get_source() (opengate.engines.SimulationOutput method) get_source_info() (opengate.managers.SourceManager method) get_source_mt() (opengate.engines.SimulationOutput method) get_source_skipped_events() (in module opengate.sources.generic) get_source_user_info() (opengate.managers.Simulation method) (opengate.Simulation method) get_source_zero_events() (in module opengate.sources.generic) get_spots() (opengate.contrib.tps.ionbeamtherapy.LayerInfo method) get_spots_from_beamset() (in module opengate.contrib.tps.ionbeamtherapy) get_spots_from_beamset_beam() (in module opengate.contrib.tps.ionbeamtherapy) get_table_column() (in module opengate.postprocessors.utility) get_table_column_names() (in module opengate.postprocessors.utility) get_table_column_to_work_on() (opengate.postprocessors.listmode.ListModeSingleAttribute method) get_tac_from_decay() (in module opengate.sources.phidsources) get_tests_data_folder() (in module opengate_core.testsDataSetup) get_tests_folder() (in module opengate.utility) get_tests_path() (in module opengate.bin.opengate_library_path) get_theta_x() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_theta_y() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_time_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) get_title_for_hdf5_node() (opengate.postprocessors.unitbase.ProcessingUnitBase method) get_transform_orbiting() (in module opengate.geometry.utility) get_transform_world_to_local() (in module opengate.geometry.utility) get_transform_world_to_local_old() (in module opengate.geometry.utility) get_translation_between_images_center() (in module opengate.image) get_translation_from_iso_center() (in module opengate.image) get_translation_from_rotation_with_center() (in module opengate.geometry.utility) get_unique_identifier_within_unit() (opengate.postprocessors.unitbase.ProcessingUnitBase method) get_unit_output_group() (opengate.postprocessors.sequences.ProcessingSequence method) (opengate.postprocessors.unitbase.ProcessingUnitBase method) get_variance_or_uncertainty() (opengate.actors.dataitems.SingleItkImageWithVariance method) get_volume() (opengate.engines.VolumeEngine method) (opengate.managers.VolumeManager method) get_volume_position_in_head() (in module opengate.contrib.spect.ge_discovery_nm670) get_weight_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) get_write_to_disk() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) GetAndClearWarnings() (opengate.contrib.tps.ionbeamtherapy.BeamInfo method) (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo method) getRange() (in module opengate.tests.utility) gid_build_all_sub_sources() (in module opengate.sources.phidsources) gid_build_all_sub_sources_atomic_relaxation() (in module opengate.sources.phidsources) gid_build_all_sub_sources_isomeric_transition() (in module opengate.sources.phidsources) gid_build_one_sub_source() (in module opengate.sources.phidsources) git (in module opengate.utility) go() (in module opengate.bin.dose_rate) (in module opengate.bin.ideal_timed_spect_reconstruction) (in module opengate.bin.opengate_info) (in module opengate.bin.opengate_library_path) (in module opengate.bin.opengate_tests) (in module opengate.bin.opengate_tests_utils) (in module opengate.bin.opengate_user_info) (in module opengate.bin.opengate_visu) (in module opengate.bin.phid_atomic_relaxation) (in module opengate.bin.phid_gammas) (in module opengate.bin.phid_info) (in module opengate.bin.phid_isomeric_transition) (in module opengate.bin.phid_tac) (in module opengate.bin.split_spect_projections) (in module opengate.bin.voxelize_iec_phantom) go_one() (in module opengate.bin.ideal_timed_spect_reconstruction) gpu_mode (opengate.sources.gansources.GANSourceDefaultGenerator attribute) gray (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr) (in module opengate.contrib.phantoms.nemaiec) (in module opengate.contrib.spect.siemens_intevo) green (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr) (in module opengate.contrib.spect.siemens_intevo)

H

half_size_mm (opengate.geometry.solids.ImageSolid attribute) half_spacing (opengate.geometry.solids.ImageSolid attribute) handler (in module opengate.logger) has_been_processed() (opengate.base.GateObject class method) has_extra_file_handle() (opengate.postprocessors.base.PostProcessor method) hc (opengate.actors.digitizers.Digitizer attribute) hdf5_group (opengate.postprocessors.base.PostProcessor property) (opengate.postprocessors.unitbase.ProcessingUnitBase attribute) HEADER (opengate.uisessions.Bcolors attribute)

hegp_collimator_repeater() (in module opengate.contrib.spect.ge_discovery_nm670) HexagonSolid (class in opengate.geometry.solids) HexagonVolume (class in opengate.geometry.volumes) hit_type (opengate.actors.doseactors.VoxelDepositActor attribute) HounsfieldUnit_to_material() (in module opengate.geometry.materials) HU_find_max_density_difference() (in module opengate.geometry.materials) HU_linear_interpolate_densities() (in module opengate.geometry.materials) HU_read_density_table() (in module opengate.geometry.materials) HU_read_materials_table() (in module opengate.geometry.materials)

I

iec_lung (in module opengate.contrib.phantoms.nemaiec) iec_plastic (in module opengate.contrib.phantoms.nemaiec) image (opengate.actors.actoroutput.UserInterfaceToActorOutputImage property) (opengate.actors.dataitems.ItkImageDataItem property) (opengate.actors.dataitems.SingleItkImage property) (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) (opengate.sources.gansources.VoxelizedSourcePDFSampler attribute) (opengate.sources.voxelsources.VoxelsSource attribute) image_plane_size_mm (opengate.actors.arfactors.ARFActor attribute) image_plane_size_pixel (opengate.actors.arfactors.ARFActor attribute) image_plane_spacing (opengate.actors.arfactors.ARFActor attribute) images (opengate.actors.dynamicactors.VolumeImageChanger attribute) images_have_same_domain() (in module opengate.image) images_have_same_spacing() (in module opengate.image) ImageSolid (class in opengate.geometry.solids) ImageVolume (class in opengate.geometry.volumes) img_coord_system (opengate.actors.doseactors.VoxelDepositActor attribute) imga (opengate.sources.gansources.VoxelizedSourcePDFSampler attribute) indent() (in module opengate.utility) indexes_are_build (opengate.sources.gansources.GANSourceDefaultGenerator attribute) INFO (in module opengate.logger) info_run_timing() (in module opengate.runtiming) info_timing() (in module opengate.runtiming) inherited_user_info_defaults (opengate.base.GateObject attribute) init_cdf() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) init_method() (in module opengate.managers) init_NIST() (opengate.geometry.materials.MaterialDatabase method) init_only (opengate.managers.Simulation attribute) (opengate.Simulation attribute) init_user_mat() (opengate.geometry.materials.MaterialDatabase method) initialize() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputRoot method) (opengate.actors.arfactors.ARFActor method) (opengate.actors.arfactors.ARFTrainingDatasetActor method) (opengate.actors.base.ActorBase method) (opengate.actors.digitizers.DigitizerAdderActor method) (opengate.actors.digitizers.DigitizerBase method) (opengate.actors.digitizers.DigitizerBlurringActor method) (opengate.actors.digitizers.DigitizerEfficiencyActor method) (opengate.actors.digitizers.DigitizerEnergyWindowsActor method) (opengate.actors.digitizers.DigitizerHitsCollectionActor method) (opengate.actors.digitizers.DigitizerProjectionActor method) (opengate.actors.digitizers.DigitizerSpatialBlurringActor method) (opengate.actors.digitizers.PhaseSpaceActor method) (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.dynamicactors.DynamicGeometryActor method) (opengate.actors.dynamicactors.GeometryChanger method) (opengate.actors.dynamicactors.VolumeRotationChanger method) (opengate.actors.dynamicactors.VolumeTranslationChanger method) (opengate.actors.filters.FilterBase method) (opengate.actors.filters.ThresholdAttributeFilter method) (opengate.actors.filters.UnscatteredPrimaryFilter method) (opengate.actors.miscactors.BremSplittingActor method) (opengate.actors.miscactors.ComptSplittingActor method) (opengate.actors.miscactors.KillActor method) (opengate.actors.miscactors.SimulationStatisticsActor method) (opengate.engines.ActorEngine method) (opengate.engines.FilterEngine method) (opengate.engines.SimulationEngine method) (opengate.engines.SourceEngine method) (opengate.engines.VolumeEngine method) (opengate.geometry.materials.MaterialDatabase method) (opengate.physics.OpticalSurface method) (opengate.physics.Region method) (opengate.postprocessors.base.PostProcessor method) (opengate.sources.beamsources.TreatmentPlanPBSource method) (opengate.sources.gansources.GANSource method) (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.generic.GenericSource method) (opengate.sources.generic.SourceBase method) (opengate.sources.generic.TemplateSource method) (opengate.sources.phidsources.PhotonFromIonDecaySource method) (opengate.sources.phspsources.PhaseSpaceSource method) (opengate.sources.phspsources.PhaseSpaceSourceGenerator method) (opengate.sources.voxelsources.VoxelsSource method) initialize_actors() (opengate.engines.SourceEngine method) initialize_after_runmanager() (opengate.engines.PhysicsEngine method) initialize_before_g4_engine() (opengate.managers.SourceManager method) initialize_before_runmanager() (opengate.engines.PhysicsEngine method)

initialize_blurring_parameters() (opengate.actors.digitizers.DigitizerBlurringActor method) (opengate.actors.digitizers.DigitizerEfficiencyActor method) (opengate.actors.digitizers.DigitizerSpatialBlurringActor method) initialize_cpp_parameters() (opengate.actors.actoroutput.ActorOutputRoot method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) initialize_device() (opengate.actors.arfactors.ARFActor method) initialize_dynamic_parametrisations() (opengate.engines.VolumeEngine method) initialize_em_switches() (opengate.physics.Region method) initialize_g4_em_parameters() (opengate.engines.PhysicsEngine method) initialize_g4_production_cuts() (opengate.physics.Region method) initialize_g4_region() (opengate.physics.Region method) initialize_g4_user_limits() (opengate.physics.Region method) initialize_g4_verbose() (opengate.engines.SimulationEngine method) initialize_global_cuts() (opengate.engines.PhysicsEngine method) initialize_hdf5_group_in_output_file() (opengate.postprocessors.unitbase.ProcessingUnitBase method) initialize_hdf5_groups() (opengate.postprocessors.base.PostProcessor method) initialize_is_done (opengate.sources.gansources.GANSourceDefaultGenerator attribute) initialize_model() (opengate.actors.arfactors.ARFActor method) initialize_optical_material_properties() (opengate.engines.PhysicsEngine method) initialize_optical_surfaces() (opengate.engines.PhysicsEngine method) initialize_output_data_handle() (opengate.postprocessors.listmode.ListModeSingleAttribute method) initialize_output_file() (opengate.postprocessors.base.PostProcessor method) initialize_parallel_world_physics() (opengate.engines.PhysicsEngine method) initialize_params() (opengate.actors.arfactors.ARFActor method) initialize_physics_biasing() (opengate.engines.PhysicsEngine method) initialize_physics_list() (opengate.engines.PhysicsEngine method) initialize_random_engine() (opengate.engines.SimulationEngine method) initialize_regions() (opengate.engines.PhysicsEngine method) initialize_source() (opengate.sources.gansources.VoxelizedSourceConditionGenerator method) initialize_source_before_g4_engine() (opengate.managers.Simulation method) (opengate.Simulation method) (opengate.sources.generic.SourceBase method) (opengate.userinfo.UserInfo method) initialize_start_end_time() (opengate.sources.generic.SourceBase method) initialize_tpPhssource() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) initialize_tpsource() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) initialize_user_event_information_flag() (opengate.engines.SimulationEngine method) initialize_user_limits_physics() (opengate.engines.PhysicsEngine method) initialize_visualisation() (opengate.engines.VisualisationEngine method) initialize_visualisation_gdml() (opengate.engines.VisualisationEngine method) initialize_visualisation_vrml() (opengate.engines.VisualisationEngine method) initialize_volume_dictionaries() (opengate.physics.Region method) inplace_merge_with() (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) (opengate.actors.dataitems.MeanValueDataItemMixin method) input_data_handles (opengate.postprocessors.unitbase.ProcessingUnitBase attribute) input_digi_collections (opengate.actors.digitizers.DigitizerProjectionActor attribute) input_file_handle (opengate.postprocessors.datafetchers.DataFetcherWithFileHandle property) input_units (opengate.postprocessors.unitbase.ProcessingUnitBase property) insert_suffix_before_extension() (in module opengate.utility) interfaces_to_user_output (opengate.actors.base.ActorBase attribute) interpolate1Dprofile() (in module opengate.tests.utility) intersect_volumes() (in module opengate.geometry.volumes) IonPencilBeamSource (class in opengate.sources.beamsources) is_close() (in module opengate.contrib.tps.ionbeamtherapy) is_dynamic (opengate.base.DynamicGateObject property) is_initialized (opengate.engines.SimulationEngine attribute) (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) is_paired (opengate.sources.gansources.GANSourceDefaultPairsGenerator attribute) is_post_processor (opengate.postprocessors.base.ProcessingGroupBase property) is_processing_unit (opengate.postprocessors.unitbase.ProcessingUnitBase property) is_rotation_matrix() (in module opengate.geometry.utility) IsoCenter (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) isomeric_transition_extract_from_ion_decay() (in module opengate.sources.phidsources) isomeric_transition_get_ene_weights_from_df() (in module opengate.sources.phidsources) isomeric_transition_get_filename() (in module opengate.sources.phidsources) isomeric_transition_get_n_greater_energy() (in module opengate.sources.phidsources) isomeric_transition_load() (in module opengate.sources.phidsources) isomeric_transition_load_all_gammas() (in module opengate.sources.phidsources) isomeric_transition_load_from_df_file() (in module opengate.sources.phidsources) isomeric_transition_load_from_file() (in module opengate.sources.phidsources) isomeric_transition_load_from_iaea_website() (in module opengate.sources.phidsources) isomeric_transition_load_OLD() (in module opengate.sources.phidsources) isomeric_transition_read_g4_data() (in module opengate.sources.phidsources) isomeric_transition_read_one_gamma_deex_channel_line() (in module opengate.sources.phidsources) isomeric_transition_store() (in module opengate.sources.phidsources) isomeric_transition_store_df_to_file() (in module opengate.sources.phidsources) item_suffix (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput property) itk_dir_to_rotation() (in module opengate.image) itk_image (opengate.geometry.volumes.ImageVolume attribute) itk_image_from_array() (in module opengate.image) ItkImageDataItem (class in opengate.actors.dataitems)

J

jaw_translation() (in module opengate.contrib.linacs.elektaversa) json_archive_filename (opengate.managers.Simulation attribute) (opengate.Simulation attribute)

json_obj_hook() (in module opengate.serialization)

K

keep_data_in_memory (opengate.actors.actoroutput.ActorOutputBase attribute) (opengate.actors.actoroutput.ActorOutputRoot attribute) keep_data_per_run (opengate.actors.actoroutput.MergeableActorOutput attribute) keV (in module siemensciosalpha)

keys_output (opengate.sources.gansources.GANSourceDefaultGenerator attribute) kill_around_target() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.linacs.elektaversa) KillActor (class in opengate.actors.miscactors) KineticEnergyFilter (class in opengate.actors.filters)

L

label_image (opengate.actors.dynamicactors.VolumeImageChanger attribute) (opengate.geometry.volumes.ImageVolume attribute) last_added_processing_unit (opengate.postprocessors.base.ProcessingGroupBase property) LayerInfo (class in opengate.contrib.tps.ionbeamtherapy) layers (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) LazyModuleLoader (class in opengate.utility) lc_read_csv() (in module opengate.sources.phidsources) lehr_collimator_repeater() (in module opengate.contrib.spect.ge_discovery_nm670) LETActor (class in opengate.actors.doseactors) linac_rotation() (in module opengate.contrib.linacs.elektaversa) linear_indices (opengate.sources.gansources.VoxelizedSourcePDFSampler attribute) ListModeSingleAttribute (class in opengate.postprocessors.listmode)

load_data() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) load_json() (in module opengate.serialization) load_optical_properties_from_xml() (in module opengate.physics) load_optical_surface_properties_from_xml() (in module opengate.physics) loads_json() (in module opengate.serialization) lock (opengate.actors.arfactors.ARFActor attribute) (opengate.sources.gansources.GANSourceDefaultGenerator attribute) log (in module opengate.logger) (opengate.sources.phidsources.PhotonFromIonDecaySource attribute) logger (in module opengate.contrib.tps.ionbeamtherapy) (in module opengate.geometry.solids)

M

m (in module siemensciosalpha) machine_name (siemensciosalpha.Ciosalpha attribute) make_builders() (in module opengate.utility) make_docstring() (in module opengate.base) make_docstring_for_user_info() (in module opengate.base) ManagedExternalLink (class in opengate.postprocessors.base) material_builders (opengate.geometry.materials.MaterialDatabase attribute) material_builders_by_filename (opengate.geometry.materials.MaterialDatabase attribute) material_database (opengate.geometry.materials.ElementBuilder attribute) (opengate.geometry.materials.MaterialBuilder attribute) (opengate.managers.VolumeManager attribute) material_to_label_lut (opengate.geometry.volumes.ImageVolume attribute) MaterialBuilder (class in opengate.geometry.materials) MaterialDatabase (class in opengate.geometry.materials) max_int (opengate.engines.SourceEngine attribute) max_theta (opengate.actors.miscactors.ComptSplittingActor attribute) MeanItkImageDataItem (class in opengate.actors.dataitems) MeanValueDataItemMixin (class in opengate.actors.dataitems) megp_collimator_repeater() (in module opengate.contrib.spect.ge_discovery_nm670) merge_data() (in module opengate.actors.dataitems) merge_data_after_simulation (opengate.actors.actoroutput.MergeableActorOutput attribute) merge_data_from_runs() (opengate.actors.actoroutput.MergeableActorOutput method) merge_into_merged_data() (opengate.actors.actoroutput.MergeableActorOutput method) merge_with() (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) (opengate.actors.dataitems.MeanValueDataItemMixin method) MergeableActorOutput (class in opengate.actors.actoroutput) merged_data (opengate.actors.actoroutput.ActorOutputBase attribute) (opengate.actors.miscactors.ActorOutputStatisticsActor attribute) meta_data (opengate.actors.dataitems.DataItem attribute) (opengate.actors.dataitems.DataItemContainer property) MetaSingletonFatal (class in opengate.base) MetaUserInfo (class in opengate.base) MeV (in module siemensciosalpha) min_weight_of_particle (opengate.actors.miscactors.ComptSplittingActor attribute) mlc_leaves_translation() (in module opengate.contrib.linacs.elektaversa) mm (in module siemensciosalpha) model (opengate.actors.arfactors.ARFActor attribute) model_data (opengate.actors.arfactors.ARFActor attribute) module C11 F18 Ga68 N13 Na22 O15 opengate opengate.actions opengate.actors opengate.actors.actoroutput opengate.actors.arfactors opengate.actors.base opengate.actors.builders opengate.actors.coincidences opengate.actors.dataitems opengate.actors.digitizers opengate.actors.doseactors opengate.actors.dynamicactors opengate.actors.filters opengate.actors.miscactors opengate.base opengate.bin opengate.bin.dose_rate opengate.bin.ideal_timed_spect_reconstruction opengate.bin.opengate_info opengate.bin.opengate_library_path opengate.bin.opengate_tests opengate.bin.opengate_tests_utils opengate.bin.opengate_user_info opengate.bin.opengate_visu opengate.bin.phid_atomic_relaxation opengate.bin.phid_gammas opengate.bin.phid_info opengate.bin.phid_isomeric_transition opengate.bin.phid_tac opengate.bin.split_spect_projections opengate.bin.voxelize_iec_phantom opengate.contrib opengate.contrib.beamlines opengate.contrib.beamlines.ionbeamline opengate.contrib.dose opengate.contrib.dose.doserate opengate.contrib.linacs opengate.contrib.linacs.dicomrtplan opengate.contrib.linacs.elektasynergy opengate.contrib.linacs.elektaversa opengate.contrib.pet opengate.contrib.pet.philipsvereos opengate.contrib.pet.siemensbiograph opengate.contrib.phantoms opengate.contrib.phantoms.necr opengate.contrib.phantoms.nemaiec opengate.contrib.spect opengate.contrib.spect.ge_discovery_nm670 opengate.contrib.spect.siemens_intevo opengate.contrib.tps opengate.contrib.tps.ionbeamtherapy opengate.contrib.tps.treatmentPlanPhsSource opengate.decorators opengate.definitions opengate.element opengate.engines opengate.exception opengate.geometry opengate.geometry.materials opengate.geometry.solids opengate.geometry.utility opengate.geometry.volumes opengate.image opengate.logger opengate.mac opengate.managers opengate.physics opengate.postprocessors opengate.postprocessors.base opengate.postprocessors.datafetchers opengate.postprocessors.image opengate.postprocessors.listmode opengate.postprocessors.sequences opengate.postprocessors.unitbase opengate.postprocessors.utility opengate.processing opengate.runtiming opengate.serialization opengate.sources opengate.sources.beamsources opengate.sources.builders opengate.sources.gansources opengate.sources.generic opengate.sources.phidsources opengate.sources.phspsources opengate.sources.voxelsources opengate.tests opengate.tests.log opengate.tests.utility opengate.uisessions opengate.userelement opengate.userhooks opengate.userinfo opengate.utility opengate_core opengate_core.g4_bindings opengate_core.g4DataSetup opengate_core.opengate_lib opengate_core.qt5Setup opengate_core.testsDataSetup Rb82 setup siemensciosalpha Zr89

module (opengate.utility.LazyModuleLoader attribute) module_name (opengate.utility.LazyModuleLoader attribute) mother_g4_logical_volume (opengate.geometry.volumes.VolumeBase property) mother_volume (opengate.geometry.volumes.VolumeBase property) move_backward() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) mswtot (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) multiply_itk_images() (in module opengate.image) multithreaded (opengate.managers.Simulation property) (opengate.Simulation property)

N

n (opengate.geometry.materials.MaterialBuilder attribute) N13 module n_sim (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) Na22 module name (opengate.actors.digitizers.Digitizer attribute) (opengate.base.GateObject attribute) (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) Name (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) name (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) (opengate.geometry.materials.ElementBuilder attribute) (opengate.geometry.materials.MaterialBuilder attribute) (opengate.geometry.volumes.ParallelWorldVolume attribute) (opengate.geometry.volumes.VolumeTreeRoot attribute) (opengate.userinfo.UserInfo property) native_rotation (opengate.geometry.volumes.ImageVolume property) native_translation (opengate.geometry.volumes.ImageVolume property) nb_ene (opengate.actors.arfactors.ARFActor attribute) need_step_limiter() (opengate.physics.Region method) need_user_special_cut() (opengate.physics.Region method) new_element() (in module opengate.element) new_materials_nb_atoms (opengate.geometry.materials.MaterialDatabase attribute) new_materials_weights (opengate.geometry.materials.MaterialDatabase attribute) new_process (opengate.engines.SimulationEngine attribute) Nfractions (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) nist_element_names (opengate.geometry.materials.MaterialDatabase attribute) nist_material_names (opengate.geometry.materials.MaterialDatabase attribute)

nlayers (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) nm (in module siemensciosalpha) nn (opengate.actors.arfactors.ARFActor attribute) NONE (in module opengate.logger) Notify() (opengate.exception.ExceptionHandler method) notify_managers() (opengate.engines.SimulationEngine method) np_get_circle_mean_value() (in module opengate.tests.utility) np_img_crop() (in module opengate.tests.utility) np_img_window_level() (in module opengate.tests.utility) np_plot_integrated_profile() (in module opengate.tests.utility) np_plot_profile_X() (in module opengate.tests.utility) np_plot_profile_Y() (in module opengate.tests.utility) np_plot_slice() (in module opengate.tests.utility) np_plot_slice_h_line() (in module opengate.tests.utility) np_plot_slice_v_line() (in module opengate.tests.utility) npainting (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) nspots (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) num_entries (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) Number (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) number (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) number_of_absorbed_events (opengate.actors.digitizers.PhaseSpaceActor attribute) number_of_killed_particles (opengate.actors.miscactors.KillActor attribute) number_of_repetitions (opengate.geometry.volumes.VolumeBase property) number_of_samples (opengate.actors.dataitems.DataItem property) (opengate.actors.dataitems.MeanValueDataItemMixin attribute) number_of_threads (opengate.managers.Simulation attribute) (opengate.Simulation attribute) number_of_warnings (opengate.base.GateObject attribute) NumberOfEnergies (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) NumberOfRangeModulators (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) NumberOfRangeShifters (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) NumpyArrayHandler (class in opengate.sources.phidsources)

O

O15 module OffsetSingleAttribute (class in opengate.postprocessors.listmode) OKBLUE (opengate.uisessions.Bcolors attribute) OKCYAN (opengate.uisessions.Bcolors attribute) OKGREEN (opengate.uisessions.Bcolors attribute) open_file() (opengate.postprocessors.datafetchers.DataFetcherHdf5 method) (opengate.postprocessors.datafetchers.DataFetcherWithFileHandle method) open_root_as_np() (in module opengate.tests.utility) opengate module opengate.actions module opengate.actors module opengate.actors.actoroutput module opengate.actors.arfactors module opengate.actors.base module opengate.actors.builders module opengate.actors.coincidences module opengate.actors.dataitems module opengate.actors.digitizers module opengate.actors.doseactors module opengate.actors.dynamicactors module opengate.actors.filters module opengate.actors.miscactors module opengate.base module opengate.bin module opengate.bin.dose_rate module opengate.bin.ideal_timed_spect_reconstruction module opengate.bin.opengate_info module opengate.bin.opengate_library_path module opengate.bin.opengate_tests module opengate.bin.opengate_tests_utils module opengate.bin.opengate_user_info module opengate.bin.opengate_visu module opengate.bin.phid_atomic_relaxation module opengate.bin.phid_gammas module opengate.bin.phid_info module opengate.bin.phid_isomeric_transition module opengate.bin.phid_tac module opengate.bin.split_spect_projections module opengate.bin.voxelize_iec_phantom module opengate.contrib module opengate.contrib.beamlines module opengate.contrib.beamlines.ionbeamline module opengate.contrib.dose module opengate.contrib.dose.doserate module opengate.contrib.linacs module opengate.contrib.linacs.dicomrtplan module opengate.contrib.linacs.elektasynergy module opengate.contrib.linacs.elektaversa module opengate.contrib.pet module opengate.contrib.pet.philipsvereos module opengate.contrib.pet.siemensbiograph module opengate.contrib.phantoms module opengate.contrib.phantoms.necr module opengate.contrib.phantoms.nemaiec module opengate.contrib.spect module opengate.contrib.spect.ge_discovery_nm670 module opengate.contrib.spect.siemens_intevo module opengate.contrib.tps module opengate.contrib.tps.ionbeamtherapy module opengate.contrib.tps.treatmentPlanPhsSource module opengate.decorators module opengate.definitions module

opengate.element module opengate.engines module opengate.exception module opengate.geometry module opengate.geometry.materials module opengate.geometry.solids module opengate.geometry.utility module opengate.geometry.volumes module opengate.image module opengate.logger module opengate.mac module opengate.managers module opengate.physics module opengate.postprocessors module opengate.postprocessors.base module opengate.postprocessors.datafetchers module opengate.postprocessors.image module opengate.postprocessors.listmode module opengate.postprocessors.sequences module opengate.postprocessors.unitbase module opengate.postprocessors.utility module opengate.processing module opengate.runtiming module opengate.serialization module opengate.sources module opengate.sources.beamsources module opengate.sources.builders module opengate.sources.gansources module opengate.sources.generic module opengate.sources.phidsources module opengate.sources.phspsources module opengate.sources.voxelsources module opengate.tests module opengate.tests.log module opengate.tests.utility module opengate.uisessions module opengate.userelement module opengate.userhooks module opengate.userinfo module opengate.utility module opengate_core module opengate_core.g4_bindings module opengate_core.g4DataSetup module opengate_core.opengate_lib module opengate_core.qt5Setup module opengate_core.testsDataSetup module optical_surface_properties_dict (opengate.physics.OpticalSurface attribute) optical_surfaces (opengate.managers.PhysicsManager attribute) optical_surfaces_properties_dict (opengate.engines.PhysicsEngine attribute) OpticalSurface (class in opengate.physics) origin_as_image_center (opengate.actors.digitizers.DigitizerProjectionActor attribute) output (opengate.actors.doseactors.VoxelDepositActor attribute) (opengate.managers.Simulation property) (opengate.Simulation property) output_array (opengate.actors.arfactors.ARFActor attribute) output_coordinate_system (opengate.actors.doseactors.VoxelDepositActor attribute) output_data_handles (opengate.postprocessors.unitbase.ProcessingUnitBase attribute) output_dir (opengate.managers.Simulation attribute) (opengate.Simulation attribute) output_directory (opengate.postprocessors.base.PostProcessor property) output_directory_external_files (opengate.postprocessors.base.PostProcessor property) output_file_handle (opengate.postprocessors.base.PostProcessor attribute) (opengate.postprocessors.unitbase.ProcessingUnitBase property) output_filename (opengate.actors.actoroutput.ActorOutputRoot attribute) (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput property) (opengate.actors.base.ActorBase property) (opengate.actors.miscactors.ActorOutputStatisticsActor attribute) output_image (opengate.actors.arfactors.ARFActor attribute) output_size (opengate.actors.arfactors.ARFActor attribute) (opengate.actors.digitizers.DigitizerProjectionActor property) output_spacing (opengate.actors.digitizers.DigitizerProjectionActor property)

P

package_data (in module setup) pandas (in module opengate.sources.phidsources) parallel_world_engine (opengate.geometry.volumes.ParallelWorldVolume attribute) parallel_world_engines (opengate.engines.VolumeEngine attribute) parallel_world_name (opengate.engines.ParallelWorldEngine attribute) parallel_world_names (opengate.managers.VolumeManager property) parallel_world_volume (opengate.engines.ParallelWorldEngine property) parallel_world_volumes (opengate.managers.VolumeManager attribute) ParallelWorldEngine (class in opengate.engines) ParallelWorldVolume (class in opengate.geometry.volumes) parent (opengate.geometry.volumes.ParallelWorldVolume attribute) (opengate.geometry.volumes.VolumeBase attribute) (opengate.geometry.volumes.VolumeTreeRoot attribute) particle (opengate.actors.filters.ParticleFilter attribute) particle_generator (opengate.sources.phspsources.PhaseSpaceSource attribute) particle_name (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) particle_names_Gate_to_G4 (in module opengate.managers) particle_with_biased_process_dictionary (opengate.managers.PhysicsListManager attribute) ParticleFilter (class in opengate.actors.filters) particles (opengate.actors.miscactors.SplittingActorBase attribute) pathCurrentFile (in module opengate_core) patient_angle (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) patient_attrs (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) patient_info (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) PatientSupportAngle (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) pdf (opengate.sources.gansources.VoxelizedSourcePDFSampler attribute) PDGCode_key (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) PhaseSpaceActor (class in opengate.actors.digitizers) phaseSpaceFolder (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) phaseSpaceList (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) phaseSpaceList_file_name (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) PhaseSpaceSource (class in opengate.sources.phspsources) PhaseSpaceSourceGenerator (class in opengate.sources.phspsources) PhotonFromIonDecaySource (class in opengate.sources.phidsources) PhotonIonDecayIsomericTransitionExtractor (class in opengate.sources.phidsources) physical_volume_index (opengate.actors.digitizers.DigitizerProjectionActor attribute) physics_engine (opengate.engines.SimulationEngine attribute) (opengate.physics.OpticalSurface attribute) (opengate.physics.Region attribute) (opengate.physics.UserLimitsPhysics attribute) physics_list_manager (opengate.managers.PhysicsManager attribute) physics_manager (opengate.engines.PhysicsEngine attribute) (opengate.managers.PhysicsListManager property) (opengate.managers.Simulation attribute) (opengate.physics.OpticalSurface property) (opengate.physics.Region property) (opengate.Simulation attribute) PhysicsEngine (class in opengate.engines) PhysicsListManager (class in opengate.managers) PhysicsManager (class in opengate.managers) pid (opengate.engines.SimulationOutput attribute) plan_attrs (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) plan_info (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) plan_label (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) plan_opt_attrs (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) plan_req_attrs (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) plot2D() (in module opengate.tests.utility) plot_compare_profile() (in module opengate.tests.utility)

plot_gauss_fit() (in module opengate.tests.utility) plot_hist() (in module opengate.tests.utility) plot_img_axis() (in module opengate.tests.utility) plot_img_x() (in module opengate.tests.utility) plot_img_y() (in module opengate.tests.utility) plot_img_z() (in module opengate.tests.utility) plot_profile() (in module opengate.tests.utility) plt (in module opengate.tests.utility) points (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) points_offset (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) policy (opengate.actors.filters.FilterBase attribute) PolyhedraSolid (class in opengate.geometry.solids) PolyhedraVolume (class in opengate.geometry.volumes) position_key_x (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) position_key_y (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) position_key_z (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) post_processor (opengate.postprocessors.base.ManagedExternalLink attribute) (opengate.postprocessors.unitbase.ProcessingUnitBase property) post_processors (opengate.managers.PostProcessingManager attribute) PostProcessingManager (class in opengate.managers) PostProcessor (class in opengate.postprocessors.base) ppid (opengate.engines.SimulationOutput attribute) pps (opengate.actors.miscactors.ActorOutputStatisticsActor property) prepare_output() (opengate.sources.generic.GenericSource method) (opengate.sources.generic.SourceBase method) prepare_output_for_run() (opengate.actors.doseactors.VoxelDepositActor method) prescription_dose (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) primary_lower_energy_threshold (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) primary_PDGCode (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) PrimaryDosimeterUnit (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) print_dic() (in module opengate.utility) print_material_database_names() (opengate.managers.VolumeManager method) print_one() (in module opengate.bin.opengate_user_info) print_opengate_info() (in module opengate.utility) print_phid_info() (in module opengate.sources.phidsources) print_test() (in module opengate.tests.utility) print_volume_tree() (opengate.managers.VolumeManager method) print_volume_types() (opengate.managers.VolumeManager method) print_volumes() (opengate.managers.VolumeManager method) priority (opengate.actors.base.ActorBase attribute) process_chunk() (in module opengate.actors.coincidences) process_cls() (in module opengate.base) process_dynamic_parametrisation() (opengate.base.DynamicGateObject method) process_name (opengate.actors.filters.TrackCreatorProcessFilter attribute) processes (opengate.actors.miscactors.BremSplittingActor attribute) (opengate.actors.miscactors.ComptSplittingActor attribute) processing_group (opengate.postprocessors.unitbase.ProcessingUnitBase attribute) processing_groups (opengate.postprocessors.base.ProcessingGroupBase property) processing_units (opengate.postprocessors.base.ProcessingGroupBase attribute) ProcessingGroupBase (class in opengate.postprocessors.base) ProcessingSequence (class in opengate.postprocessors.sequences) ProcessingUnitBase (class in opengate.postprocessors.unitbase) progress_bar (opengate.engines.SourceEngine attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) ProjectionListMode (class in opengate.postprocessors.image) propagate_operator() (opengate.actors.dataitems.DataItemContainer method) propagate_operator_inplace() (opengate.actors.dataitems.DataItemContainer method) push_to_cpp_image() (opengate.actors.doseactors.VoxelDepositActor method)

Q

quotient (opengate.actors.dataitems.QuotientItkImage property)

QuotientItkImage (class in opengate.actors.dataitems) QuotientMeanItkImage (class in opengate.actors.dataitems)

R

r (opengate.actors.dynamicactors.VolumeRotationChanger attribute) radiation_types (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) RadiationType (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) raise_except() (in module opengate.exception) random_engine (opengate.managers.Simulation attribute) (opengate.Simulation attribute) random_seed (opengate.managers.Simulation attribute) (opengate.Simulation attribute) range_timing() (in module opengate.runtiming) RangeModulatorIDs (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) RangeShifterIDs (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) rashi (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) Rb82 module rd (in module opengate.sources.phidsources) read() (in module opengate.contrib.linacs.dicomrtplan) (opengate.geometry.materials.ElementBuilder method) (opengate.geometry.materials.MaterialBuilder method) read_beta_plus_spectra() (in module opengate.sources.generic) read_file() (opengate.geometry.solids.TesselatedSolid method) read_from_file() (opengate.geometry.materials.MaterialDatabase method) read_gan_and_keys() (opengate.sources.gansources.GANSourceDefaultGenerator method) read_image_info() (in module opengate.image) read_input_image() (opengate.geometry.volumes.ImageVolume method) read_list_of_Phs() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) read_mac_file_to_commands() (in module opengate.utility) read_mhd() (in module opengate.tests.utility) read_next_line() (in module opengate.geometry.materials) read_one_element() (opengate.geometry.materials.MaterialBuilder method) read_one_item() (opengate.geometry.materials.MaterialDatabase method) read_one_submat() (opengate.geometry.materials.MaterialBuilder method) read_phsp_and_keys() (opengate.sources.phspsources.PhaseSpaceSourceGenerator method) read_stat_file() (in module opengate.tests.utility) read_stat_file_json() (in module opengate.tests.utility) read_stat_file_legacy() (in module opengate.tests.utility) read_tag() (in module opengate.geometry.materials) read_tag_with_unit() (in module opengate.geometry.materials) read_voxel_materials() (in module opengate.geometry.materials) ReceiveG4cerr() (opengate.uisessions.UIsessionSilent method) (opengate.uisessions.UIsessionVerbose method) ReceiveG4cout() (opengate.uisessions.UIsessionSilent method) (opengate.uisessions.UIsessionVerbose method) recover_user_output() (opengate.actors.base.ActorBase method) recursive_userinfo_to_dict() (in module opengate.base) recursively_search_object() (in module opengate.base) red (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr) (in module opengate.contrib.phantoms.nemaiec) (in module opengate.contrib.spect.siemens_intevo) Region (class in opengate.physics) regions (opengate.managers.PhysicsManager attribute) register_actor() (opengate.actions.RunAction method) register_all_actions() (opengate.engines.ActionEngine method) register_event_actions() (opengate.engines.ActionEngine method) register_output_data_handle() (opengate.postprocessors.unitbase.ProcessingUnitBase method) register_run_actions() (opengate.engines.ActionEngine method) register_sensitive_detector_to_children() (in module opengate.engines) register_sensitive_detectors() (opengate.engines.ActorEngine method) register_to_actors() (opengate.engines.ActorEngine method) register_to_volumes() (opengate.engines.VolumeEngine method) register_tracking_actions() (opengate.engines.ActionEngine method) rel_diff() (in module opengate.tests.utility) rel_diff_range() (in module opengate.tests.utility) release_engines() (opengate.engines.SimulationEngine method) release_file_handles() (opengate.postprocessors.base.PostProcessor method) release_g4_references() (opengate.base.GateObject method) (opengate.engines.ActionEngine method) (opengate.engines.PhysicsEngine method) (opengate.engines.SimulationEngine method) (opengate.engines.SourceEngine method) (opengate.engines.VisualisationEngine method) (opengate.geometry.solids.ImageSolid method) (opengate.geometry.solids.SolidBase method) (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.ParallelWorldVolume method) (opengate.geometry.volumes.RepeatParametrisedVolume method) (opengate.geometry.volumes.VolumeBase method) (opengate.physics.OpticalSurface method) (opengate.physics.Region method)

release_optical_surface_g4_references() (opengate.engines.PhysicsEngine method) reloadPython (in module opengate_core) remove_multiples() (in module opengate.actors.coincidences) render_tree() (in module opengate.geometry.utility) repeat_colli_hole() (in module opengate.contrib.spect.siemens_intevo) RepeatableVolume (class in opengate.geometry.volumes) repeated_volume (opengate.geometry.volumes.RepeatParametrisedVolume attribute) repeated_volume_index (opengate.actors.doseactors.VoxelDepositActor attribute) RepeatParametrisedVolume (class in opengate.geometry.volumes) repetition_index (opengate.actors.dynamicactors.VolumeRotationChanger attribute) (opengate.actors.dynamicactors.VolumeTranslationChanger attribute) requires_attribute() (in module opengate.decorators) requires_attribute_fatal() (in module opengate.decorators) requires_fatal() (in module opengate.decorators) requires_not_none() (in module opengate.decorators) requires_warning() (in module opengate.decorators) resample_itk_image_like() (in module opengate.image) reset() (opengate.managers.ActorManager method) (opengate.managers.PhysicsManager method) (opengate.managers.VolumeManager method) (opengate.physics.OpticalSurface method) (opengate.physics.Region method) reset_warnings() (opengate.managers.Simulation method) (opengate.Simulation method) restore() (opengate.sources.phidsources.NumpyArrayHandler method) restore_userinfo_properties() (in module opengate.base) retrieve_g4_physics_constructor_class() (in module opengate.managers) return_site_packages_dir() (in module opengate.bin.opengate_library_path) (in module opengate.bin.opengate_tests_utils) return_tests_path() (in module opengate.bin.opengate_library_path) rm (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) root_cmp (opengate.tests.utility.RootComparison attribute) root_compare4() (in module opengate.tests.utility) root_compare_param() (in module opengate.tests.utility) root_compare_param_tree() (in module opengate.tests.utility) root_file (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) root_logical_volumes (opengate.physics.Region attribute) root_ref (opengate.tests.utility.RootComparison attribute) RootComparison (class in opengate.tests.utility) rot_g4_as_np() (in module opengate.geometry.utility) rot_np_as_g4() (in module opengate.geometry.utility) rotate_PhS_Source (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) rotation (opengate.actors.doseactors.VoxelDepositActor attribute) (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) (siemensciosalpha.Ciosalpha property) rotation_around_user_point() (in module opengate.contrib.linacs.elektaversa) rotation_list (opengate.geometry.volumes.VolumeBase property) rotation_vector_director (opengate.actors.miscactors.ComptSplittingActor attribute) rotations (opengate.actors.dynamicactors.VolumeRotationChanger attribute) rs (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) RUN (in module opengate.logger) run() (opengate.managers.Simulation method) (opengate.postprocessors.base.PostProcessor method) (opengate.Simulation method) (setup.CMakeBuild method) run_engine() (opengate.engines.SimulationEngine method) run_manager_finalizer (opengate.engines.SimulationEngine attribute) run_timing_intervals (opengate.engines.SimulationEngine attribute) (opengate.engines.SourceEngine attribute) (opengate.managers.Simulation attribute) (opengate.managers.SourceManager attribute) (opengate.Simulation attribute) (opengate.sources.generic.SourceBase attribute) RunAction (class in opengate.actions) running_verbose_level (opengate.managers.Simulation attribute) (opengate.Simulation attribute) russian_roulette (opengate.actors.miscactors.ComptSplittingActor attribute)

S

sample_indices() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) sample_indices_phys() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) sample_indices_slower() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) sampler (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) samples_g4() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) sanitized_plan_label (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) save_label_image() (opengate.geometry.volumes.ImageVolume method) ScalarDataItem (class in opengate.actors.dataitems) scale_dose() (in module opengate.tests.utility) scale_itk_image() (in module opengate.image) scatter (opengate.actors.doseactors.FluenceActor attribute) score_in (opengate.actors.doseactors.DoseActor attribute) (opengate.actors.doseactors.LETActor attribute) searchsorted2d() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) sequence_check() (in module opengate.contrib.tps.ionbeamtherapy) set_active() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) set_beamline_model() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) set_collimation() (siemensciosalpha.Ciosalpha method) set_data() (opengate.actors.dataitems.ArrayDataItem method) (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) set_default_generator() (opengate.sources.gansources.GANPairsSource method) (opengate.sources.gansources.GANSource method) set_default_user_info() (opengate.sources.beamsources.IonPencilBeamSource static method) (opengate.sources.beamsources.TreatmentPlanPBSource static method) (opengate.sources.gansources.GANPairsSource static method) (opengate.sources.gansources.GANSource static method) (opengate.sources.generic.GenericSource static method) (opengate.sources.generic.SourceBase static method) (opengate.sources.generic.TemplateSource static method) (opengate.sources.phidsources.PhotonFromIonDecaySource static method) (opengate.sources.phspsources.PhaseSpaceSource static method) (opengate.sources.voxelsources.VoxelsSource static method) (opengate.userelement.UserElement static method) set_distance_source_to_isocenter() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) set_distance_stearmag_to_isocenter() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) set_g4_data_path() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) set_group_by_depth() (opengate.actors.digitizers.DigitizerAdderActor method) set_head_orientation() (in module opengate.contrib.spect.ge_discovery_nm670) (in module opengate.contrib.spect.siemens_intevo) set_hit_collection() (opengate.actors.digitizers.Digitizer method) set_image_properties() (opengate.actors.actoroutput.ActorOutputImage method) (opengate.actors.dataitems.ItkImageDataItem method) set_item_suffix() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) set_linac_head_motion() (in module opengate.contrib.linacs.elektaversa) set_max_step_size() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_max_time() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_max_track_length() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_min_ekine() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_min_range() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_node_name() (in module opengate.postprocessors.utility) set_output_filename() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) set_param_gauss() (opengate.actors.digitizers.DigitizerBlurringActor method) set_param_inverse_square() (opengate.actors.digitizers.DigitizerBlurringActor method) set_param_linear() (opengate.actors.digitizers.DigitizerBlurringActor method) set_particles_to_simulate() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) set_phaseSpaceFolder() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) set_phaseSpaceList_file_name() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) set_production_cut() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_qt5_path() (in module opengate_core) (in module opengate_core.qt5Setup) set_rectangular_field() (in module opengate.contrib.linacs.elektaversa) set_simulation() (opengate.userelement.UserElement method) set_source_rad_energy_spectrum() (in module opengate.sources.generic) set_spots() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) set_spots_from_rtplan() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) set_time_intervals_from_rtplan() (in module opengate.contrib.linacs.elektaversa) set_transform_from_user_info() (opengate.sources.voxelsources.VoxelsSource method) set_user_limits_particles() (opengate.managers.PhysicsManager method) set_write_to_disk() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) setter_hook_verbose_level() (in module opengate.managers) setup module shortcut_for_single_output_actor() (in module opengate.actors.base) siemensciosalpha module sigma_to_fwhm (in module opengate.definitions) sigma_x_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) sigma_y_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) sim (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) (siemensciosalpha.Ciosalpha attribute) Simulation (class in opengate) (class in opengate.managers) simulation (opengate.actors.digitizers.Digitizer attribute) (opengate.base.GateObject property) (opengate.engines.SimulationEngine attribute) (opengate.engines.SimulationOutput attribute) (opengate.engines.VisualisationEngine attribute) (opengate.managers.FilterManager attribute) (opengate.managers.PhysicsManager attribute) (opengate.managers.SourceManager attribute)

simulation_engine (opengate.engines.EngineBase attribute) (opengate.engines.SourceEngine attribute) SimulationEngine (class in opengate.engines) SimulationOutput (class in opengate.engines) SimulationStatisticsActor (class in opengate.actors.miscactors) SingleArray (class in opengate.actors.dataitems) SingleItkImage (class in opengate.actors.dataitems) SingleItkImageWithVariance (class in opengate.actors.dataitems) SingleMeanItkImage (class in opengate.actors.dataitems) size (opengate.actors.digitizers.DigitizerProjectionActor attribute) (opengate.actors.doseactors.VoxelDepositActor attribute) size_pix (opengate.geometry.volumes.ImageVolume property) SnoutID (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) SnoutPosition (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) solid_info (opengate.geometry.solids.SolidBase property) SolidBase (class in opengate.geometry.solids) sorted_actors (opengate.managers.ActorManager property) source (siemensciosalpha.Ciosalpha attribute) source_builders (in module opengate.sources.builders) source_engine (opengate.engines.SimulationEngine attribute) source_img_info (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) source_manager (opengate.managers.Simulation attribute) (opengate.Simulation attribute) source_manager_options (opengate.engines.SourceEngine attribute) source_only (siemensciosalpha.Ciosalpha attribute) source_type_names (in module opengate.sources.builders) SourceBase (class in opengate.sources.generic) sourcedir (setup.CMakeExtension attribute) SourceEngine (class in opengate.engines) SourceManager (class in opengate.managers) sources (opengate.engines.SimulationOutput attribute) (opengate.engines.SourceEngine attribute) sources_by_thread (opengate.engines.SimulationOutput attribute) sp (in module siemensciosalpha) spacing (opengate.actors.digitizers.DigitizerProjectionActor attribute) (opengate.actors.doseactors.VoxelDepositActor attribute) (opengate.geometry.volumes.ImageVolume property) special_physics_constructor_classes (opengate.managers.PhysicsListManager attribute) sphere_radius (opengate.sources.gansources.GANSourceConditionalPairsGenerator attribute) SphereSolid (class in opengate.geometry.solids) SphereVolume (class in opengate.geometry.volumes) split_spect_projections() (in module opengate.image) splitting_factor (opengate.actors.miscactors.SplittingActorBase attribute) SplittingActorBase (class in opengate.actors.miscactors) SpotInfo (class in opengate.contrib.tps.ionbeamtherapy) spots (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) spots_info_from_txt() (in module opengate.contrib.tps.ionbeamtherapy) sps (opengate.actors.miscactors.ActorOutputStatisticsActor property) standard_error_c4_correction() (in module opengate.utility) start() (opengate.engines.SourceEngine method) start_and_stop() (opengate.engines.SimulationEngine method) start_gdml_visu() (in module opengate.engines) start_output_origin (opengate.actors.digitizers.DigitizerProjectionActor attribute) start_simulation() (opengate.engines.ActorEngine method) start_visualisation() (opengate.engines.VisualisationEngine method) start_vrml_visu() (in module opengate.engines) StartSimulationAction() (opengate.actors.arfactors.ARFTrainingDatasetActor method) (opengate.actors.base.ActorBase method) (opengate.actors.digitizers.DigitizerAdderActor method) (opengate.actors.digitizers.DigitizerBlurringActor method) (opengate.actors.digitizers.DigitizerEfficiencyActor method) (opengate.actors.digitizers.DigitizerEnergyWindowsActor method) (opengate.actors.digitizers.DigitizerHitsCollectionActor method) (opengate.actors.digitizers.DigitizerProjectionActor method) (opengate.actors.digitizers.DigitizerReadoutActor method) (opengate.actors.digitizers.DigitizerSpatialBlurringActor method) (opengate.actors.digitizers.PhaseSpaceActor method) (opengate.actors.miscactors.SimulationStatisticsActor method) state (opengate.geometry.materials.MaterialBuilder attribute) std (opengate.actors.dataitems.SingleItkImageWithVariance property) stop_simulation() (opengate.engines.ActorEngine method) store_actors() (opengate.engines.SimulationOutput method) store_data() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) (opengate.actors.miscactors.ActorOutputStatisticsActor method) store_hook_log() (opengate.engines.SimulationOutput method) store_input_files (opengate.managers.Simulation attribute) (opengate.Simulation attribute) store_json_archive (opengate.managers.Simulation attribute) (opengate.Simulation attribute) store_meta_data() (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) store_output_data() (opengate.actors.base.ActorBase method) (opengate.actors.miscactors.SimulationStatisticsActor method) store_sources() (opengate.engines.SimulationOutput method) store_user_attributes() (opengate.postprocessors.unitbase.ProcessingUnitBase method) subtract_volumes() (in module opengate.geometry.volumes) sum_itk_images() (in module opengate.image) symbol (opengate.geometry.materials.ElementBuilder attribute) (opengate.geometry.materials.MaterialBuilder attribute)

T

t0 (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) t1 (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) target_func() (in module opengate.processing) target_ROI_name (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) target_ROI_number (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) TemplateSource (class in opengate.sources.generic) TesselatedSolid (class in opengate.geometry.solids) TesselatedVolume (class in opengate.geometry.volumes) test_ok() (in module opengate.tests.utility) test_tps_spot_size_positions() (in module opengate.tests.utility) test_weights() (in module opengate.tests.utility) theta_x_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) theta_y_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) ThresholdAttributeFilter (class in opengate.actors.filters) to_dictionary() (opengate.actors.base.ActorBase method) (opengate.actors.dynamicactors.DynamicGeometryActor method) (opengate.base.GateObject method) (opengate.managers.ActorManager method) (opengate.managers.PhysicsManager method) (opengate.managers.Simulation method) (opengate.managers.VolumeManager method) (opengate.physics.Region method) (opengate.postprocessors.base.ProcessingGroupBase method) (opengate.Simulation method) to_json_file() (opengate.managers.Simulation method) (opengate.Simulation method) to_json_string() (opengate.managers.Simulation method) (opengate.Simulation method) torch (in module opengate.sources.gansources) total_number_of_entries (opengate.actors.digitizers.PhaseSpaceActor attribute) tps (opengate.actors.miscactors.ActorOutputStatisticsActor property) track_types_flag (opengate.actors.miscactors.SimulationStatisticsActor attribute) TrackCreatorProcessFilter (class in opengate.actors.filters) transform_images_point() (in module opengate.image) translate_mesh_to_center() (opengate.geometry.solids.TesselatedSolid method) translate_particle_name_gate_to_geant4() (in module opengate.physics) translate_point_to_volume() (in module opengate.geometry.utility)

translation (opengate.actors.doseactors.VoxelDepositActor attribute) (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) (siemensciosalpha.Ciosalpha property) translation_from_sad() (in module opengate.contrib.linacs.elektaversa) translation_list (opengate.geometry.volumes.VolumeBase property) translations (opengate.actors.dynamicactors.VolumeTranslationChanger attribute) transparent (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.nemaiec) trap_g4_param() (in module opengate.contrib.linacs.elektaversa) TrapSolid (class in opengate.geometry.solids) TrapVolume (class in opengate.geometry.volumes) TrdSolid (class in opengate.geometry.solids) TrdVolume (class in opengate.geometry.volumes) TreatmentMachineName (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) TreatmentPlanPBSource (class in opengate.sources.beamsources) TreatmentPlanPhsSource (class in opengate.contrib.tps.treatmentPlanPhsSource) TreatmentPlanSource (class in opengate.contrib.tps.ionbeamtherapy) tree_roots (opengate.postprocessors.base.ProcessingGroupBase property) TubsSolid (class in opengate.geometry.solids) TubsVolume (class in opengate.geometry.volumes) tuneID (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) type (opengate.geometry.materials.ElementBuilder attribute) (opengate.geometry.materials.MaterialBuilder attribute) type_name (opengate.actors.digitizers.DigitizerBlurringActor attribute) (opengate.base.GateObject property) (opengate.sources.beamsources.IonPencilBeamSource attribute) (opengate.sources.beamsources.TreatmentPlanPBSource attribute) (opengate.sources.gansources.GANPairsSource attribute) (opengate.sources.gansources.GANSource attribute) (opengate.sources.generic.GenericSource attribute) (opengate.sources.generic.TemplateSource attribute) (opengate.sources.phidsources.PhotonFromIonDecaySource attribute) (opengate.sources.phspsources.PhaseSpaceSource attribute) (opengate.sources.voxelsources.VoxelsSource attribute) (opengate.userinfo.UserInfo attribute)

U

ui_sub_sources (opengate.sources.phidsources.PhotonFromIonDecaySource attribute) uid (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) UIsessionSilent (class in opengate.uisessions) UIsessionVerbose (class in opengate.uisessions) umount() (opengate.postprocessors.base.ManagedExternalLink method) uncertainty (opengate.actors.dataitems.SingleItkImageWithVariance property) (opengate.actors.doseactors.FluenceActor attribute) UNDERLINE (opengate.uisessions.Bcolors attribute) unite_volumes() (in module opengate.geometry.volumes) UnscatteredPrimaryFilter (class in opengate.actors.filters) update_image_py_to_cpp() (in module opengate.image) update_label_image() (opengate.geometry.volumes.ImageVolume method) update_meta_data() (opengate.actors.dataitems.DataItemContainer method) update_output() (opengate.postprocessors.unitbase.ProcessingUnitBase method) update_processing_tree() (opengate.postprocessors.base.ProcessingGroupBase method) (opengate.postprocessors.sequences.ProcessingSequence method) update_processing_tree_if_needed() (opengate.postprocessors.base.ProcessingGroupBase method) update_tac_activity() (opengate.sources.generic.GenericSource method) update_tac_activity_ui() (in module opengate.sources.phidsources) update_tree_node() (opengate.postprocessors.unitbase.ProcessingUnitBase method) update_volume_tree() (opengate.managers.VolumeManager method) update_volume_tree_if_needed() (opengate.managers.VolumeManager method) use_activity_origin (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) use_more_ram (opengate.actors.doseactors.DoseActor attribute) use_multithread (opengate.managers.Simulation property) (opengate.Simulation property) user_hook_active_regions() (in module opengate.userhooks) user_hook_after_init (opengate.engines.SimulationEngine attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) user_hook_after_run (opengate.engines.SimulationEngine attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) user_hook_dump_material_properties() (in module opengate.userhooks) user_hook_em_switches() (in module opengate.userhooks) user_hook_log (opengate.engines.SimulationEngine attribute) (opengate.engines.SimulationOutput attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) user_info (opengate.base.GateObject attribute) (opengate.sources.gansources.GANSourceDefaultGenerator attribute) (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) (opengate.userelement.UserElement attribute) user_info_actors (opengate.managers.ActorManager attribute) user_info_defaults (opengate.actors.actoroutput.ActorOutputBase attribute) (opengate.actors.actoroutput.ActorOutputRoot attribute) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer attribute) (opengate.actors.actoroutput.MergeableActorOutput attribute) (opengate.actors.arfactors.ARFActor attribute) (opengate.actors.arfactors.ARFTrainingDatasetActor attribute) (opengate.actors.base.ActorBase attribute) (opengate.actors.digitizers.DigitizerAdderActor attribute) (opengate.actors.digitizers.DigitizerBase attribute) (opengate.actors.digitizers.DigitizerBlurringActor attribute) (opengate.actors.digitizers.DigitizerEfficiencyActor attribute) (opengate.actors.digitizers.DigitizerEnergyWindowsActor attribute) (opengate.actors.digitizers.DigitizerHitsCollectionActor attribute) (opengate.actors.digitizers.DigitizerProjectionActor attribute) (opengate.actors.digitizers.DigitizerReadoutActor attribute) (opengate.actors.digitizers.DigitizerSpatialBlurringActor attribute) (opengate.actors.digitizers.PhaseSpaceActor attribute) (opengate.actors.doseactors.DoseActor attribute) (opengate.actors.doseactors.FluenceActor attribute) (opengate.actors.doseactors.LETActor attribute) (opengate.actors.doseactors.VoxelDepositActor attribute) (opengate.actors.dynamicactors.GeometryChanger attribute) (opengate.actors.dynamicactors.VolumeImageChanger attribute) (opengate.actors.dynamicactors.VolumeRotationChanger attribute) (opengate.actors.dynamicactors.VolumeTranslationChanger attribute) (opengate.actors.filters.FilterBase attribute) (opengate.actors.filters.KineticEnergyFilter attribute) (opengate.actors.filters.ParticleFilter attribute) (opengate.actors.filters.ThresholdAttributeFilter attribute) (opengate.actors.filters.TrackCreatorProcessFilter attribute) (opengate.actors.miscactors.ActorOutputStatisticsActor attribute) (opengate.actors.miscactors.BremSplittingActor attribute) (opengate.actors.miscactors.ComptSplittingActor attribute) (opengate.actors.miscactors.SimulationStatisticsActor attribute) (opengate.actors.miscactors.SplittingActorBase attribute) (opengate.base.DynamicGateObject attribute) (opengate.base.GateObject attribute) (opengate.geometry.solids.BooleanSolid attribute) (opengate.geometry.solids.BoxSolid attribute) (opengate.geometry.solids.ConsSolid attribute) (opengate.geometry.solids.HexagonSolid attribute) (opengate.geometry.solids.PolyhedraSolid attribute) (opengate.geometry.solids.SphereSolid attribute) (opengate.geometry.solids.TesselatedSolid attribute) (opengate.geometry.solids.TrapSolid attribute) (opengate.geometry.solids.TrdSolid attribute) (opengate.geometry.solids.TubsSolid attribute) (opengate.geometry.volumes.ImageVolume attribute) (opengate.geometry.volumes.RepeatParametrisedVolume attribute) (opengate.geometry.volumes.VolumeBase attribute) (opengate.managers.PhysicsManager attribute) (opengate.managers.PostProcessingManager attribute) (opengate.managers.Simulation attribute) (opengate.physics.OpticalSurface attribute) (opengate.physics.Region attribute) (opengate.postprocessors.datafetchers.DataFetcherBase attribute) (opengate.postprocessors.datafetchers.DataFetcherHdf5 attribute) (opengate.postprocessors.image.ProjectionListMode attribute) (opengate.postprocessors.listmode.GaussianBlurringSingleAttribute attribute) (opengate.postprocessors.listmode.ListModeSingleAttribute attribute) (opengate.postprocessors.listmode.OffsetSingleAttribute attribute) (opengate.postprocessors.unitbase.ProcessingUnitBase attribute) (opengate.Simulation attribute)

user_info_filters (opengate.managers.FilterManager attribute) user_info_physics_manager (opengate.engines.PhysicsEngine property) user_info_sources (opengate.managers.SourceManager attribute) user_output (opengate.actors.base.ActorBase attribute) user_output_name (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput attribute) UserElement (class in opengate.userelement) UserInfo (class in opengate.userinfo) UserInterfaceToActorOutputImage (class in opengate.actors.actoroutput) UserInterfaceToActorOutputUsingDataItemContainer (class in opengate.actors.actoroutput) UserLimitsPhysics (class in opengate.physics)

V

value_max (opengate.actors.filters.ThresholdAttributeFilter attribute) value_min (opengate.actors.filters.ThresholdAttributeFilter attribute) variance (opengate.actors.dataitems.SingleItkImageWithVariance property) vec_g4_as_np() (in module opengate.geometry.utility) vec_np_as_g4() (in module opengate.geometry.utility) vector_director (opengate.actors.miscactors.ComptSplittingActor attribute) verbose (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor attribute) verbose_close (opengate.engines.EngineBase attribute) (opengate.engines.SimulationEngine attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) (opengate.userelement.UserElement attribute) verbose_getstate (opengate.engines.EngineBase attribute) (opengate.engines.SimulationEngine attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) (opengate.userelement.UserElement attribute) verbose_level (opengate.managers.Simulation attribute) (opengate.Simulation attribute) verify_necessary_parameters_are_set() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) verify_phs_files_exist() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) version (in module setup) (opengate.sources.gansources.VoxelizedSourcePDFSampler attribute) visu (opengate.managers.Simulation attribute) (opengate.Simulation attribute) visu_commands (opengate.managers.Simulation attribute) (opengate.Simulation attribute) visu_commands_gdml (opengate.managers.Simulation attribute) (opengate.Simulation attribute) visu_commands_vrml (opengate.managers.Simulation attribute) (opengate.Simulation attribute) visu_engine (opengate.engines.SimulationEngine attribute) visu_filename (opengate.managers.Simulation attribute) (opengate.Simulation attribute) visu_type (opengate.managers.Simulation attribute) (opengate.Simulation attribute)

visu_verbose (opengate.managers.Simulation attribute) (opengate.Simulation attribute) VisualisationEngine (class in opengate.engines) volume (siemensciosalpha.Ciosalpha attribute) volume_depth_in_tree (opengate.geometry.volumes.VolumeBase property) volume_engine (opengate.engines.SimulationEngine attribute) (opengate.geometry.volumes.VolumeBase attribute) volume_manager (opengate.actors.dynamicactors.GeometryChanger property) (opengate.engines.VolumeEngine attribute) (opengate.geometry.volumes.ParallelWorldVolume attribute) (opengate.geometry.volumes.VolumeBase property) (opengate.geometry.volumes.VolumeTreeRoot attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) volume_name (opengate.actors.digitizers.Digitizer attribute) volume_names (opengate.managers.VolumeManager property) volume_orbiting_transform() (in module opengate.geometry.utility) volume_tree_root (opengate.managers.VolumeManager attribute) volume_type (opengate.geometry.volumes.VolumeBase property) volume_types (opengate.managers.VolumeManager attribute) VolumeBase (class in opengate.geometry.volumes) VolumeEngine (class in opengate.engines) VolumeImageChanger (class in opengate.actors.dynamicactors) VolumeManager (class in opengate.managers) VolumeRotationChanger (class in opengate.actors.dynamicactors) volumes (opengate.managers.VolumeManager attribute) volumes_regions_lut (opengate.managers.PhysicsManager attribute) VolumeTranslationChanger (class in opengate.actors.dynamicactors) VolumeTreeRoot (class in opengate.geometry.volumes) VoxelDepositActor (class in opengate.actors.doseactors) voxelize_geometry() (opengate.managers.Simulation method) (opengate.Simulation method) voxelize_volume() (in module opengate.image) VoxelizedSourceConditionGenerator (class in opengate.sources.gansources) VoxelizedSourcePDFSampler (class in opengate.sources.gansources) VoxelsSource (class in opengate.sources.voxelsources)

W

w (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) warn_user() (opengate.base.GateObject method) (opengate.managers.Simulation method) (opengate.Simulation method) WARNING (opengate.uisessions.Bcolors attribute) warning() (in module opengate.exception) (in module setup) warnings (opengate.engines.SimulationOutput attribute) (opengate.managers.Simulation property) (opengate.Simulation property) water (in module opengate.contrib.phantoms.nemaiec) weight_key (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) weight_threshold (opengate.actors.miscactors.ComptSplittingActor attribute) weights (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) white (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr) (in module opengate.contrib.spect.siemens_intevo) world (opengate.managers.Simulation property) (opengate.Simulation property) world_volume (opengate.geometry.volumes.VolumeBase property) (opengate.managers.VolumeManager property)

wrap_init_method() (in module opengate.base) write() (opengate.actors.dataitems.ArithmeticDataItem method) (opengate.actors.dataitems.DataDictionary method) (opengate.actors.dataitems.DataItem method) (opengate.actors.dataitems.DataItemContainer method) (opengate.actors.dataitems.ItkImageDataItem method) (opengate.actors.dataitems.ScalarDataItem method) write_data() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) (opengate.actors.miscactors.ActorOutputStatisticsActor method) write_data_if_requested() (opengate.actors.actoroutput.ActorOutputBase method) (opengate.actors.actoroutput.ActorOutputUsingDataItemContainer method) (opengate.actors.miscactors.ActorOutputStatisticsActor method) write_gauss_param_to_file() (in module opengate.tests.utility) write_image_with_pytables() (in module opengate.postprocessors.image) write_itk_image() (in module opengate.image) write_output_to_disk_if_requested() (opengate.actors.base.ActorBase method) write_to_disk (opengate.actors.actoroutput.ActorOutputRoot attribute) (opengate.actors.actoroutput.BaseUserInterfaceToActorOutput property) (opengate.actors.base.ActorBase property) (opengate.actors.miscactors.ActorOutputStatisticsActor attribute)

X

x (opengate.contrib.tps.ionbeamtherapy.LayerInfo attribute)

xiec (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute)

Y

y (opengate.contrib.tps.ionbeamtherapy.LayerInfo attribute) yellow (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr) (in module opengate.contrib.spect.siemens_intevo)

yiec (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute)

Z

z (opengate.sources.phidsources.PhotonIonDecayIsomericTransitionExtractor attribute) Zeff (opengate.geometry.materials.ElementBuilder attribute)

Zr89 module