Index

_

__call__() (opengate.base.MetaUserInfo method) (opengate.base.MetaUserInfoSingleton method) __check_phSpace_params() (opengate.sources.beamsources.IonPencilBeamSource method) __del__() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) __enter__() (opengate.engines.SimulationEngine method) (opengate.engines.VisualisationEngine method) __exit__() (opengate.engines.SimulationEngine method) (opengate.engines.VisualisationEngine method) __gate_dictionary_objects__ (in module opengate.definitions) __gate_list_objects__ (in module opengate.definitions) __getitem__() (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo method) __getstate__() (opengate.actors.arfactors.ARFActor method) (opengate.actors.base.ActorBase method) (opengate.actors.digitizers.DigitizerProjectionActor method) (opengate.actors.digitizers.PhaseSpaceActor method) (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.filters.FilterBase method) (opengate.engines.SimulationEngine method) (opengate.managers.PhysicsListManager method) (opengate.managers.PhysicsManager method) (opengate.sources.gansources.GANSourceConditionalPairsGenerator method) (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) (opengate.sources.generic.SourceBase method) (opengate.sources.phspsources.PhaseSpaceSourceGenerator method) (opengate.sources.voxelsources.VoxelsSource method) __one_indent__ (in module opengate.definitions) __repr__() (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo method) (opengate.geometry.materials.ElementBuilder method) (opengate.geometry.materials.MaterialBuilder method) __setstate__() (opengate.engines.SimulationEngine method) (opengate.managers.PhysicsListManager method) (opengate.managers.PhysicsManager method) __str__() (opengate.actors.arfactors.ARFActor method) (opengate.actors.arfactors.ARFTrainingDatasetActor method) (opengate.actors.base.ActorBase method) (opengate.actors.digitizers.DigitizerAdderActor method) (opengate.actors.digitizers.DigitizerBlurringActor method) (opengate.actors.digitizers.DigitizerEfficiencyActor method) (opengate.actors.digitizers.DigitizerEnergyWindowsActor method) (opengate.actors.digitizers.DigitizerHitsCollectionActor method) (opengate.actors.digitizers.DigitizerProjectionActor method) (opengate.actors.digitizers.DigitizerReadoutActor method) (opengate.actors.digitizers.DigitizerSpatialBlurringActor method) (opengate.actors.digitizers.PhaseSpaceActor method) (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.filters.FilterBase method) (opengate.actors.miscactors.MotionVolumeActor method) (opengate.actors.miscactors.SimulationStatisticsActor method) (opengate.actors.miscactors.TestActor method) (opengate.managers.ActorManager method) (opengate.managers.FilterManager method) (opengate.managers.PhysicsManager method) (opengate.managers.Simulation method) (opengate.managers.SourceManager method) (opengate.managers.VolumeManager method) (opengate.Simulation method) (opengate.sources.generic.SourceBase method) (opengate.userelement.UserElement method) (opengate.userinfo.UserInfo method)

__world_name__ (in module opengate.definitions) _beam_number_is_fishy (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) _beam_numbers_corrupt (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _beams (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _chkrp() (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo method) _cp (opengate.contrib.tps.ionbeamtherapy.LayerInfo attribute) _created_classes (opengate.base.MetaUserInfo attribute) (opengate.base.MetaUserInfoSingleton attribute) _dcmbeam (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) _dose_roiname (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _dose_roinumber (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _g4_production_cuts_initialized (opengate.physics.Region attribute) _g4_region_initialized (opengate.physics.Region attribute) _g4_user_limits_initialized (opengate.physics.Region attribute) _get_pbs_position() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) _get_pbs_rotation() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) _get_user_info_options() (in module opengate.base) _get_voxelized_geometry() (opengate.managers.Simulation method) (opengate.Simulation method) _getter_hook_user_info_rotation() (in module opengate.geometry.volumes) _getter_hook_user_info_translation() (in module opengate.geometry.volumes) _icp0 (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) _index (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) _initialize_image_parameterisation() (opengate.geometry.volumes.ImageVolume method) _instances (opengate.base.MetaUserInfoSingleton attribute) _is_closed (opengate.engines.SimulationEngine attribute) (opengate.engines.VisualisationEngine attribute) _is_constructed (opengate.engines.VolumeEngine attribute) (opengate.geometry.volumes.VolumeBase attribute) _layers (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) _make_boolean_volume() (in module opengate.geometry.volumes) _make_physical_volume() (opengate.geometry.volumes.VolumeBase method) _make_property() (in module opengate.base) _name (opengate.userinfo.UserInfo attribute) _need_tree_update (opengate.managers.VolumeManager attribute) _polynomial_map() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) _request_volume_tree_update() (opengate.geometry.volumes.VolumeBase method) _rp (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _rpdir (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _rpfp (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _rpuid (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) _run_simulation_engine() (opengate.managers.Simulation method) (opengate.Simulation method) _setter_hook_ensure_array() (in module opengate.geometry.volumes) _setter_hook_user_info_mother() (in module opengate.geometry.volumes) _setter_hook_user_info_rotation() (in module opengate.geometry.volumes) _setter_hook_user_info_translation() (in module opengate.geometry.volumes) _setter_hook_voxel_materials() (in module opengate.geometry.volumes) _simulation_engine_closing() (opengate.managers.PhysicsManager method) (opengate.managers.VolumeManager method) _update_node() (opengate.geometry.volumes.ParallelWorldVolume method) (opengate.geometry.volumes.VolumeBase method) _warnings (opengate.contrib.tps.ionbeamtherapy.BeamInfo attribute) (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute)

A

action_engine (opengate.engines.SimulationEngine attribute) ActionEngine (class in opengate.engines) actions (opengate.actors.miscactors.SourceInfoActor attribute) activity_source_filename (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) actor_builders (in module opengate.actors.actorbuilders) actor_engine (opengate.engines.SimulationEngine attribute) actor_manager (opengate.managers.Simulation attribute) (opengate.Simulation attribute) actor_output (opengate.actors.base.ActorBase attribute) actor_type_names (in module opengate.actors.actorbuilders) ActorBase (class in opengate.actors.base) ActorEngine (class in opengate.engines) ActorManager (class in opengate.managers) actors (opengate.actors.digitizers.Digitizer attribute) (opengate.engines.ActorEngine attribute) (opengate.engines.SimulationOutput attribute) add_actor() (opengate.managers.ActorManager method) (opengate.managers.Simulation method) (opengate.Simulation method) add_background_source() (in module opengate.contrib.phantoms.nemaiec) add_border() (in module opengate.tests.utility) add_central_cylinder_source() (in module opengate.contrib.phantoms.nemaiec) add_circle() (in module opengate.tests.utility) add_colorbar() (in module opengate.tests.utility) add_detection_plane_for_arf() (in module opengate.contrib.spect.genm670) add_digitizer() (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.spect.genm670) add_digitizer_energy_windows() (in module opengate.contrib.spect.genm670) add_element_to_material() (opengate.geometry.materials.MaterialBuilder method) add_fake_table() (in module opengate.contrib.spect.genm670) add_filter() (opengate.managers.FilterManager method) (opengate.managers.Simulation method) (opengate.Simulation method) add_flattening_filter() (in module opengate.contrib.linacs.elektasynergy) add_g4_command_after_init() (opengate.managers.Simulation method) (opengate.Simulation method) add_g4_command_before_init() (opengate.managers.Simulation method) (opengate.Simulation method) add_ge_nm670_spect_box() (in module opengate.contrib.spect.genm670) add_ge_nm670_spect_collimator() (in module opengate.contrib.spect.genm670) add_ge_nm670_spect_crystal() (in module opengate.contrib.spect.genm670) add_ge_nm67_fake_spect_head() (in module opengate.contrib.spect.genm670) add_ge_nm67_spect_head() (in module opengate.contrib.spect.genm670) add_iec_all_spheres() (in module opengate.contrib.phantoms.nemaiec) add_iec_body() (in module opengate.contrib.phantoms.nemaiec) add_iec_central_cylinder() (in module opengate.contrib.phantoms.nemaiec) add_iec_one_sphere() (in module opengate.contrib.phantoms.nemaiec) add_iec_phantom() (in module opengate.contrib.phantoms.nemaiec) add_ionizing_chamber() (in module opengate.contrib.linacs.elektasynergy) add_linac() (in module opengate.contrib.linacs.elektasynergy) add_material_database() (opengate.managers.VolumeManager method) add_material_nb_atoms() (opengate.geometry.materials.MaterialDatabase method) add_material_weights() (opengate.geometry.materials.MaterialDatabase method)

add_mirror() (in module opengate.contrib.linacs.elektasynergy) add_module() (opengate.actors.digitizers.Digitizer method) add_necr_phantom() (in module opengate.contrib.phantoms.necr) add_necr_source() (in module opengate.contrib.phantoms.necr) add_necr_source_debug() (in module opengate.contrib.phantoms.necr) add_one_sphere_source() (in module opengate.contrib.phantoms.nemaiec) add_parallel_world() (opengate.managers.Simulation method) (opengate.managers.VolumeManager method) (opengate.Simulation method) add_pet() (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) add_pet_debug() (in module opengate.contrib.pet.philipsvereos) add_properties_to_class() (in module opengate.base) add_region() (opengate.managers.PhysicsManager method) add_simplified_digitizer_Tc99m() (in module opengate.contrib.spect.genm670) add_source() (opengate.managers.Simulation method) (opengate.managers.SourceManager method) (opengate.Simulation method) add_spheres_sources() (in module opengate.contrib.phantoms.nemaiec) add_submat_to_material() (opengate.geometry.materials.MaterialBuilder method) add_table() (in module opengate.contrib.pet.philipsvereos) add_target() (in module opengate.contrib.linacs.elektasynergy) add_volume() (opengate.managers.Simulation method) (opengate.managers.VolumeManager method) (opengate.Simulation method) Aeff (opengate.geometry.materials.ElementBuilder attribute) align_image_with_physical_volume() (in module opengate.image) all_beta_plus_radionuclides (in module opengate.sources.generic) all_volume_names (opengate.managers.VolumeManager property) all_world_volumes (opengate.managers.VolumeManager property) ancestor_volumes (opengate.geometry.volumes.VolumeBase property) apply() (opengate.actors.arfactors.ARFActor method) apply_all_g4_commands_after_init() (opengate.engines.SimulationEngine method) apply_all_g4_commands_before_init() (opengate.engines.SimulationEngine method) apply_g4_command() (opengate.engines.SimulationEngine method) apply_with_lock() (opengate.actors.arfactors.ARFActor method) arangeDx() (in module opengate.tests.utility) ARFActor (class in opengate.actors.arfactors) ARFTrainingDatasetActor (class in opengate.actors.arfactors) assert_equal_dic() (in module opengate.utility) assert_filtered_imagesprofile1D() (in module opengate.tests.utility) assert_images() (in module opengate.tests.utility) assert_images_properties() (in module opengate.tests.utility) assert_img_sum() (in module opengate.tests.utility) assert_key() (in module opengate.utility) assert_keys() (in module opengate.utility) assert_run_timing() (in module opengate.runtiming) assert_same_material() (in module opengate.geometry.materials) assert_stats() (in module opengate.tests.utility) assert_unique_element_name() (in module opengate.utility) associate_volume() (opengate.physics.Region method) attach_methods() (in module opengate.base) available_g4_physics_constructors (opengate.managers.PhysicsListManager attribute)

B

batch (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) batch_nb (opengate.actors.arfactors.ARFActor attribute) batch_size (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) Bcolors (class in opengate.uisessions) beam_angles (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) beam_names (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) beam_numbers (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) beamFraction (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) BeamInfo (class in opengate.contrib.tps.ionbeamtherapy) beamline_model (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) BeamlineModel (class in opengate.contrib.beamlines.ionbeamline) beams (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) BeamsetInfo (class in opengate.contrib.tps.ionbeamtherapy) BeginOfEventAction() (opengate.actors.miscactors.SourceInfoActor method) (opengate.actors.miscactors.TestActor method) BeginOfRunAction() (opengate.actions.RunAction method) (opengate.actors.miscactors.SourceInfoActor method) BeginOfRunAction_actors (opengate.actions.RunAction attribute) blue (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr) (in module opengate.contrib.phantoms.nemaiec) BOLD (opengate.uisessions.Bcolors attribute)

BooleanSolid (class in opengate.geometry.solids) BooleanVolume (class in opengate.geometry.volumes) bounding_box_size (opengate.geometry.solids.SolidBase property) bounding_limits (opengate.geometry.solids.SolidBase property) box_add_size() (in module opengate.geometry.utility) BoxSolid (class in opengate.geometry.solids) BoxVolume (class in opengate.geometry.volumes) bs_attrs (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) bs_info (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) Build() (opengate.engines.ActionEngine method) build() (opengate.geometry.materials.ElementBuilder method) (opengate.geometry.materials.MaterialBuilder method) build_extension() (setup.CMakeBuild method) build_solid() (opengate.geometry.solids.BooleanSolid method) (opengate.geometry.solids.BoxSolid method) (opengate.geometry.solids.ConsSolid method) (opengate.geometry.solids.HexagonSolid method) (opengate.geometry.solids.PolyhedraSolid method) (opengate.geometry.solids.SphereSolid method) (opengate.geometry.solids.TrapSolid method) (opengate.geometry.solids.TrdSolid method) (opengate.geometry.solids.TubsSolid method) BuildForMaster() (opengate.engines.ActionEngine method)

C

C11 module check_consistency_g4_data_folders() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) check_diff() (in module opengate.tests.utility) check_diff_abs() (in module opengate.tests.utility) check_dose_grid_geometry() (in module opengate.tests.utility) check_for_non_required_files_folders() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) check_G4_data() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) check_overlaps() (opengate.engines.VolumeEngine method) check_parameters() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) check_production_cuts() (in module opengate.userhooks) check_property() (in module opengate.base) check_property_name() (in module opengate.base) check_tests_data_folder() (in module opengate_core.testsDataSetup) check_user_info() (in module opengate.userelement) check_volumes_overlap() (opengate.engines.SimulationEngine method) clone_user_info() (opengate.base.GateObject method) close() (opengate.actors.base.ActorBase method) (opengate.actors.filters.FilterBase method) (opengate.actors.miscactors.MotionVolumeActor method) (opengate.engines.ActionEngine method) (opengate.engines.ActorEngine method) (opengate.engines.PhysicsEngine method) (opengate.engines.SimulationEngine method) (opengate.engines.SourceEngine method) (opengate.engines.VisualisationEngine method) (opengate.engines.VolumeEngine method) (opengate.geometry.solids.ImageSolid method) (opengate.geometry.solids.SolidBase method) (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.ParallelWorldVolume method) (opengate.geometry.volumes.RepeatParametrisedVolume method) (opengate.geometry.volumes.VolumeBase method) (opengate.geometry.volumes.VolumeTreeRoot method) (opengate.physics.Region method) (opengate.physics.UserLimitsPhysics method) close_engines() (opengate.engines.SimulationEngine method) close_physics_constructors() (opengate.engines.PhysicsEngine method) CMakeBuild (class in setup) CMakeExtension (class in setup) color_error (in module opengate.exception) (in module opengate_core.testsDataSetup) compare_branches() (in module opengate.tests.utility) compare_branches_values() (in module opengate.tests.utility) compare_dose_at_points() (in module opengate.tests.utility) compare_itk_image() (in module opengate.image) compare_itk_image_content() (in module opengate.image) compare_itk_image_info() (in module opengate.image) compare_root() (in module opengate.tests.utility) compare_root2() (in module opengate.tests.utility) compare_root3() (in module opengate.tests.utility) compare_trees() (in module opengate.tests.utility) compare_trees4() (in module opengate.tests.utility) compareGaussParamArrays() (in module opengate.tests.utility) compareGaussParamFromFile() (in module opengate.tests.utility) compareRange() (in module opengate.tests.utility) components (opengate.geometry.materials.MaterialBuilder attribute) compute_bins_density() (in module opengate.sources.generic) compute_cdf_and_total_yield() (in module opengate.sources.generic) compute_directions (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) compute_image_3D_CDF() (in module opengate.image) compute_plane_position_and_distance_to_crystal() (in module opengate.contrib.spect.genm670) compute_positions() (in module opengate.bin.ideal_timed_spect_reconstruction) compute_sphere_activity() (in module opengate.contrib.phantoms.nemaiec) compute_sphere_centers_and_volumes() (in module opengate.contrib.phantoms.nemaiec) compute_square() (opengate.actors.doseactors.DoseActor method) compute_thickness() (opengate.actors.digitizers.DigitizerProjectionActor method) compute_total_spheres_activity() (in module opengate.contrib.phantoms.nemaiec) compute_uncertainty() (opengate.actors.doseactors.DoseActor method) cons_add_size() (in module opengate.geometry.utility)

ConsSolid (class in opengate.geometry.solids) Construct() (opengate.engines.ParallelWorldEngine method) (opengate.engines.VolumeEngine method) construct() (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.ParallelWorldVolume method) (opengate.geometry.volumes.RepeatParametrisedVolume method) (opengate.geometry.volumes.VolumeBase method) construct_logical_volume() (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.VolumeBase method) construct_material() (opengate.geometry.volumes.VolumeBase method) construct_physical_volume() (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.RepeatableVolume method) (opengate.geometry.volumes.RepeatParametrisedVolume method) (opengate.geometry.volumes.VolumeBase method) construct_solid() (opengate.geometry.solids.ImageSolid method) (opengate.geometry.solids.SolidBase method) constructor_functions (opengate.geometry.solids.BooleanSolid attribute) ConstructParticle() (opengate.physics.UserLimitsPhysics method) ConstructProcess() (opengate.physics.UserLimitsPhysics method) ConstructSD() (opengate.engines.ParallelWorldEngine method) ConstructSDandField() (opengate.engines.VolumeEngine method) ConsVolume (class in opengate.geometry.volumes) CONTEXT_SETTINGS (in module opengate.bin.ideal_timed_spect_reconstruction) conv_x (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) conv_y (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) copy_generated_particle_to_g4() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) copy_input_files() (opengate.managers.Simulation method) (opengate.Simulation method) copy_user_info() (in module opengate.element) counts (opengate.actors.miscactors.SimulationStatisticsActor attribute) create_2D_Edep_colorMap() (in module opengate.tests.utility) create_3d_image() (in module opengate.image) create_actors() (opengate.engines.ActorEngine method) create_g4_optical_properties_table() (in module opengate.engines) create_g4_source() (opengate.sources.beamsources.IonPencilBeamSource method) (opengate.sources.gansources.GANPairsSource method) (opengate.sources.gansources.GANSource method) (opengate.sources.generic.GenericSource method) (opengate.sources.generic.SourceBase method) (opengate.sources.generic.TemplateSource method) (opengate.sources.phspsources.PhaseSpaceSource method) (opengate.sources.voxelsources.VoxelsSource method) create_g4_source_manager() (opengate.engines.SourceEngine method) create_gate_object_from_dict() (in module opengate.base) create_image_like() (in module opengate.image) create_image_like_info() (in module opengate.image) create_image_with_extent() (in module opengate.image) create_image_with_volume_extent() (in module opengate.image) create_master_source_manager() (opengate.engines.SourceEngine method) create_material() (in module opengate.contrib.linacs.elektasynergy) (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.phantoms.nemaiec) create_modular_physics_list_class() (in module opengate.managers) create_parallel_world_engines() (opengate.engines.VolumeEngine method) create_physics_list_classes() (opengate.managers.PhysicsListManager method) create_position_vector() (in module opengate.tests.utility) create_repeat_parametrisation() (opengate.geometry.volumes.RepeatParametrisedVolume method) create_run_manager() (opengate.engines.SimulationEngine method) create_simulation() (in module opengate.contrib.dose.doserate) create_volume() (opengate.managers.VolumeManager method) created_physics_list_classes (opengate.managers.PhysicsListManager attribute) cumulative_distribution_functions() (opengate.sources.voxelsources.VoxelsSource method) current_filename (opengate.geometry.materials.MaterialDatabase attribute) current_index (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) current_random_seed (opengate.engines.SimulationEngine attribute) (opengate.engines.SimulationOutput attribute) current_run_interval (opengate.engines.SourceEngine attribute) (opengate.managers.SourceManager attribute) current_section (opengate.geometry.materials.MaterialDatabase attribute) current_thread_id (opengate.sources.generic.SourceBase attribute) current_visu_filename (opengate.engines.VisualisationEngine attribute) cut_particle_names (in module opengate.physics) cycle_count (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute)

D

data_packages (in module opengate_core), [1] (in module opengate_core.g4DataSetup) DD() (in module opengate.utility) DDF() (in module opengate.utility) DEBUG (in module opengate.logger) debug_nb_hits (opengate.actors.arfactors.ARFActor attribute) debug_nb_hits_before (opengate.actors.arfactors.ARFActor attribute) default() (opengate.serialization.GateJSONEncoder method) density (opengate.geometry.materials.MaterialBuilder attribute) detected_particles (opengate.actors.arfactors.ARFActor attribute) dict_compare() (in module opengate.tests.utility) digest_user_info_defaults() (in module opengate.base) Digitizer (class in opengate.actors.digitizers) DigitizerAdderActor (class in opengate.actors.digitizers) DigitizerBlurringActor (class in opengate.actors.digitizers) DigitizerEfficiencyActor (class in opengate.actors.digitizers) DigitizerEnergyWindowsActor (class in opengate.actors.digitizers) DigitizerHitsCollectionActor (class in opengate.actors.digitizers) DigitizerProjectionActor (class in opengate.actors.digitizers) DigitizerReadoutActor (class in opengate.actors.digitizers) DigitizerSpatialBlurringActor (class in opengate.actors.digitizers) direction_key_x (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) direction_key_y (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) direction_key_z (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) dispatch_to_subprocess() (in module opengate.processing) distance_nozzle_iso (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) distance_source_to_isocenter (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) distance_stearmag_to_isocenter_x (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute)

distance_stearmag_to_isocenter_y (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) distance_to_center_of_crystal() (in module opengate.contrib.spect.genm670) divide_itk_images() (in module opengate.image) DoseActor (class in opengate.actors.doseactors) download_G4_data() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) download_tests_data() (in module opengate_core.testsDataSetup) dump() (opengate.managers.FilterManager method) (opengate.sources.generic.SourceBase method) dump_actor_types() (opengate.managers.ActorManager method) dump_actors() (opengate.managers.ActorManager method) dump_available_physics_lists() (opengate.managers.PhysicsManager method) dump_bg_activity() (in module opengate.contrib.phantoms.nemaiec) dump_build_materials() (opengate.engines.VolumeEngine method) dump_info_physics_lists() (opengate.managers.PhysicsListManager method) (opengate.managers.PhysicsManager method) dump_json() (in module opengate.serialization) dump_material_database_names() (opengate.managers.VolumeManager method) dump_material_like_Gate() (in module opengate.geometry.materials) dump_production_cuts() (opengate.managers.PhysicsManager method) (opengate.physics.Region method) dump_source_types() (opengate.managers.SourceManager method) dump_sources() (opengate.managers.SourceManager method) dump_spheres_activity() (in module opengate.contrib.phantoms.nemaiec) dump_volume_tree() (opengate.managers.VolumeManager method) dump_volume_types() (opengate.managers.VolumeManager method) dump_volumes() (opengate.managers.VolumeManager method) dumps_json() (in module opengate.serialization) duration (opengate.actors.miscactors.TestActor attribute)

E

element_builders (in module opengate.element) (opengate.geometry.materials.MaterialDatabase attribute) element_builders_by_filename (opengate.geometry.materials.MaterialDatabase attribute) element_type (opengate.actors.base.ActorBase attribute) (opengate.actors.filters.FilterBase attribute) (opengate.userinfo.UserInfo attribute) ElementBuilder (class in opengate.geometry.materials) elements_name_symbol (in module opengate.definitions) enable_decay (opengate.managers.PhysicsManager property) enable_user_event_information() (opengate.engines.SimulationEngine method) end_time (opengate.actors.miscactors.TestActor attribute) ENDC (opengate.uisessions.Bcolors attribute) EndOfRunAction() (opengate.actions.RunAction method) (opengate.actors.miscactors.SourceInfoActor method) (opengate.actors.miscactors.TestActor method) EndOfRunAction_actors (opengate.actions.RunAction attribute) EndSimulationAction() (opengate.actors.arfactors.ARFActor method) (opengate.actors.digitizers.DigitizerAdderActor method) (opengate.actors.digitizers.DigitizerBlurringActor method) (opengate.actors.digitizers.DigitizerEfficiencyActor method) (opengate.actors.digitizers.DigitizerEnergyWindowsActor method) (opengate.actors.digitizers.DigitizerHitsCollectionActor method) (opengate.actors.digitizers.DigitizerProjectionActor method) (opengate.actors.digitizers.DigitizerReadoutActor method) (opengate.actors.digitizers.DigitizerSpatialBlurringActor method) (opengate.actors.digitizers.PhaseSpaceActor method) (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.miscactors.SimulationStatisticsActor method) (opengate.actors.miscactors.TestActor method)

ene_win_down_scatter() (in module opengate.actors.digitizers) ene_win_peak() (in module opengate.actors.digitizers) ene_win_up_scatter() (in module opengate.actors.digitizers) energy (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) energy_key (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) energy_mean_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) energy_spread_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) energy_windows_peak_scatter() (in module opengate.actors.digitizers) EngineBase (class in opengate.engines) ensure_directory_exists() (in module opengate.utility) ensure_filename_is_str() (in module opengate.utility) ensure_is_g4_rotation() (in module opengate.geometry.utility) ensure_is_g4_transform() (in module opengate.geometry.utility) ensure_is_g4_translation() (in module opengate.geometry.utility) epsilon_x_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) epsilon_y_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) EVENT (in module opengate.logger) event_count (opengate.actors.miscactors.TestActor attribute) ExceptionHandler (class in opengate.exception) exponential_func() (in module opengate.tests.utility) extract_gauss_param_1D() (in module opengate.tests.utility)

F

F18 module FAIL (opengate.uisessions.Bcolors attribute) fatal() (in module opengate.exception) (opengate.sources.gansources.GANSourceDefaultGenerator method) fields (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) file (opengate.actors.miscactors.SourceInfoActor attribute) filenames (opengate.geometry.materials.MaterialDatabase attribute) filter_builders (in module opengate.actors.builders) filter_manager (opengate.managers.Simulation attribute) (opengate.Simulation attribute) filter_type_names (in module opengate.actors.builders) FilterBase (class in opengate.actors.filters) FilterManager (class in opengate.managers) filters (opengate.managers.FilterManager attribute) filters_list (opengate.actors.base.ActorBase attribute) FinalCumulativeMetersetWeight (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) find_all_gate_objects() (in module opengate.base) find_all_paths() (in module opengate.base) find_first_module() (opengate.actors.digitizers.Digitizer method) find_or_build_material() (opengate.managers.VolumeManager method) find_or_create_region() (opengate.managers.PhysicsManager method) find_paths_in_gate_object_dictionary() (in module opengate.base)

FindOrBuildElement() (opengate.geometry.materials.MaterialDatabase method) FindOrBuildMaterial() (opengate.geometry.materials.MaterialDatabase method) first_run (opengate.actors.doseactors.DoseActor attribute) (opengate.actors.doseactors.LETActor attribute) fit_exponential_decay() (in module opengate.tests.utility) FLOAT_MAX (in module opengate.definitions) FluenceActor (class in opengate.actors.doseactors) fNumberOfAbsorbedEvents (opengate.actors.digitizers.PhaseSpaceActor attribute) formatter (in module opengate.logger) from_dictionary() (opengate.base.GateObject method) (opengate.geometry.solids.BooleanSolid method) (opengate.managers.PhysicsManager method) (opengate.managers.Simulation method) (opengate.managers.VolumeManager method) (opengate.physics.Region method) (opengate.Simulation method) from_json_file() (opengate.managers.Simulation method) (opengate.Simulation method) from_json_string() (opengate.managers.Simulation method) (opengate.Simulation method) fTotalNumberOfEntries (opengate.actors.digitizers.PhaseSpaceActor attribute) fTotalSkippedEvents (opengate.sources.generic.GenericSource attribute) fTotalZeroEvents (opengate.sources.generic.GenericSource attribute) fwhm_to_sigma (in module opengate.definitions)

G

g4_actor (opengate.actors.arfactors.ARFActor attribute) g4_best_unit() (in module opengate.utility) g4_cuts_by_regions (opengate.engines.PhysicsEngine attribute) g4_decay (opengate.engines.PhysicsEngine attribute) g4_elements (opengate.geometry.materials.MaterialDatabase attribute) g4_em_parameters (opengate.engines.PhysicsEngine attribute) g4_EventAction (opengate.engines.ActionEngine attribute) g4_exception_handler (opengate.engines.SimulationEngine attribute) g4_HepRandomEngine (opengate.engines.SimulationEngine attribute) g4_logical_volume (opengate.geometry.volumes.VolumeBase attribute) g4_logical_x (opengate.geometry.volumes.ImageVolume attribute) g4_logical_y (opengate.geometry.volumes.ImageVolume attribute) g4_logical_z (opengate.geometry.volumes.ImageVolume attribute) g4_main_PrimaryGenerator (opengate.engines.ActionEngine attribute) g4_master_source_manager (opengate.engines.SourceEngine attribute) g4_material (opengate.geometry.volumes.VolumeBase attribute) g4_materials (opengate.geometry.materials.MaterialDatabase attribute) g4_NistManager (opengate.geometry.materials.MaterialDatabase attribute) g4_optical_material_tables (opengate.engines.PhysicsEngine attribute) g4_parallel_world_physics (opengate.engines.PhysicsEngine attribute) g4_particle_table (opengate.engines.SourceEngine attribute) g4_phys_vol (opengate.actors.doseactors.DoseActor attribute) (opengate.actors.doseactors.FluenceActor attribute) (opengate.actors.doseactors.LETActor attribute) g4_physical_volume (opengate.geometry.volumes.VolumeBase property) g4_physical_volumes (opengate.geometry.volumes.VolumeBase attribute) g4_physical_x (opengate.geometry.volumes.ImageVolume attribute) g4_physical_y (opengate.geometry.volumes.ImageVolume attribute) g4_physical_z (opengate.geometry.volumes.ImageVolume attribute) g4_physics_list (opengate.engines.PhysicsEngine attribute) g4_PrimaryGenerator (opengate.engines.ActionEngine attribute) g4_production_cuts (opengate.physics.Region attribute) g4_radioactive_decay (opengate.engines.PhysicsEngine attribute) g4_region (opengate.geometry.volumes.VolumeBase property) (opengate.physics.Region attribute) g4_rotation (opengate.geometry.volumes.VolumeBase property) g4_rotations (opengate.actors.miscactors.MotionVolumeActor attribute) g4_RunAction (opengate.engines.ActionEngine attribute) g4_RunManager (opengate.engines.SimulationEngine attribute) g4_solid (opengate.geometry.solids.SolidBase attribute) g4_solid_x (opengate.geometry.solids.ImageSolid attribute) g4_solid_y (opengate.geometry.solids.ImageSolid attribute) g4_solid_z (opengate.geometry.solids.ImageSolid attribute) g4_source (opengate.sources.generic.SourceBase attribute) g4_special_user_cuts_storage (opengate.physics.UserLimitsPhysics attribute) g4_state (opengate.engines.SimulationEngine property) g4_StateManager (opengate.engines.SimulationEngine attribute) g4_step_limiter_storage (opengate.physics.UserLimitsPhysics attribute) g4_thread_source_managers (opengate.engines.SourceEngine attribute) g4_TrackingAction (opengate.engines.ActionEngine attribute) g4_transform (opengate.geometry.volumes.VolumeBase property) g4_translation (opengate.geometry.volumes.VolumeBase property) g4_translations (opengate.actors.miscactors.MotionVolumeActor attribute) g4_ui (opengate.engines.SimulationEngine attribute) g4_units (in module opengate) (in module opengate.utility) g4_user_limits (opengate.physics.Region attribute) g4_vis_attributes (opengate.geometry.volumes.VolumeBase attribute) g4_vis_executive (opengate.engines.VisualisationEngine attribute) g4_voxel_param (opengate.geometry.volumes.ImageVolume attribute) g4_world_log_vol (opengate.geometry.volumes.ParallelWorldVolume attribute) (opengate.geometry.volumes.VolumeBase attribute) g4_world_phys_vol (opengate.geometry.volumes.ParallelWorldVolume attribute) Ga68 module gaga (opengate.sources.gansources.GANSourceDefaultGenerator attribute) gan_info (opengate.sources.gansources.GANSourceDefaultGenerator attribute) GANPairsSource (class in opengate.sources.gansources) GANSource (class in opengate.sources.gansources) GANSourceConditionalGenerator (class in opengate.sources.gansources) GANSourceConditionalPairsGenerator (class in opengate.sources.gansources) GANSourceDefaultGenerator (class in opengate.sources.gansources) GANSourceDefaultPairsGenerator (class in opengate.sources.gansources) gantry_angle (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) garf (opengate.actors.arfactors.ARFActor attribute) gate_physics_constructors (opengate.engines.PhysicsEngine attribute) gate_source_path (in module opengate.sources.generic) GateJSONEncoder (class in opengate.serialization) GateObject (class in opengate.base) GateObjectSingleton (class in opengate.base) Gauss() (in module opengate.tests.utility), [1] gaussian_fit() (in module opengate.tests.utility) generate() (opengate.sources.phspsources.PhaseSpaceSourceGenerator method) generate_condition (opengate.sources.gansources.GANSourceConditionalGenerator attribute) (opengate.sources.gansources.GANSourceConditionalPairsGenerator attribute) generate_condition() (opengate.sources.gansources.VoxelizedSourceConditionGenerator method) generate_isotropic_directions() (in module opengate.sources.generic) generate_pos_dir_one_sphere() (in module opengate.contrib.phantoms.nemaiec) generate_pos_dir_spheres() (in module opengate.contrib.phantoms.nemaiec) generate_pos_one_sphere() (in module opengate.contrib.phantoms.nemaiec) generate_pos_spheres() (in module opengate.contrib.phantoms.nemaiec) generate_until_next_primary (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) generator() (opengate.sources.gansources.GANSourceConditionalGenerator method) (opengate.sources.gansources.GANSourceConditionalPairsGenerator method) (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) GenericSource (class in opengate.sources.generic) get_1D_profile() (in module opengate.tests.utility) get_actor() (opengate.engines.ActorEngine method) (opengate.engines.SimulationOutput method) get_actor_user_info() (opengate.managers.ActorManager method) (opengate.managers.Simulation method) (opengate.Simulation method)

get_base_dir() (in module setup) get_branch() (in module opengate.tests.utility) get_builder() (in module opengate.element) get_circular_repetition() (in module opengate.geometry.utility) get_cmake_dir() (in module setup) get_collimator() (in module opengate.contrib.spect.genm670) get_cpp_image() (in module opengate.image) get_database_material_names() (opengate.engines.VolumeEngine method) (opengate.geometry.materials.MaterialDatabase method) get_default_sphere_centers_and_volumes() (in module opengate.contrib.phantoms.nemaiec) get_default_sphere_centers_and_volumes_old() (in module opengate.contrib.phantoms.nemaiec) get_default_test_paths() (in module opengate.tests.utility) get_direction_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) get_element_class() (in module opengate.element) get_energy() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_energy_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) get_entry_start() (opengate.sources.phspsources.PhaseSpaceSourceGenerator method) get_epsilon_x() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_epsilon_y() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_estimated_number_of_events() (opengate.sources.generic.SourceBase method) get_filter() (opengate.managers.FilterManager method) get_G4_data_folder() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) get_G4_data_paths() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) get_gan_key_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) get_gauss_param_xy() (in module opengate.tests.utility) get_gpu_mode_for_tests() (in module opengate.tests.utility) get_grid_repetition() (in module opengate.geometry.utility) get_image_center() (in module opengate.image) get_info_from_image() (in module opengate.image) get_keys_correspondence() (in module opengate.tests.utility) get_last_module() (opengate.actors.digitizers.Digitizer method) get_libG4_path() (in module opengate_core) get_material_name_variants() (in module opengate.utility) get_msw() (opengate.contrib.tps.ionbeamtherapy.SpotInfo method) get_n_samples_from_ratio() (in module opengate.contrib.phantoms.nemaiec) get_new_key_name() (in module opengate.tests.utility) get_orientation_for_CT() (in module opengate.contrib.spect.genm670) get_origin_wrt_images_g4_position() (in module opengate.image) get_output_keys() (opengate.sources.gansources.GANSourceDefaultGenerator method) get_output_keys_with_lock() (opengate.sources.gansources.GANSourceDefaultGenerator method) get_output_path() (opengate.managers.Simulation method) (opengate.Simulation method) get_physics_list() (opengate.managers.PhysicsListManager method) get_plane_position_and_distance_to_crystal() (in module opengate.contrib.spect.genm670) get_position_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) get_rad_gamma_energy_spectrum() (in module opengate.sources.generic) get_rad_yield() (in module opengate.sources.generic) get_random_folder_name() (in module opengate.utility) get_range_from_image() (in module opengate.tests.utility) get_release_date() (in module opengate.utility) get_repetition_index_from_name() (opengate.geometry.volumes.RepeatableVolume method) get_repetition_name_from_index() (opengate.geometry.volumes.RepeatableVolume method) get_rnd_seed() (in module opengate.utility) get_sigma_energy() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_sigma_x() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_sigma_y() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_simplified_digitizer_channels_I131() (in module opengate.actors.digitizers) get_simplified_digitizer_channels_In111() (in module opengate.actors.digitizers) get_simplified_digitizer_channels_Lu177() (in module opengate.actors.digitizers) get_simplified_digitizer_channels_rad() (in module opengate.actors.digitizers) get_simplified_digitizer_channels_Tc99m() (in module opengate.actors.digitizers) get_site_packages_dir() (in module opengate_core) get_source() (opengate.engines.SimulationOutput method) get_source_info() (opengate.managers.SourceManager method) get_source_mt() (opengate.engines.SimulationOutput method) get_source_skipped_events() (in module opengate.sources.generic) get_source_user_info() (opengate.managers.Simulation method) (opengate.Simulation method) get_source_zero_events() (in module opengate.sources.generic) get_spots() (opengate.contrib.tps.ionbeamtherapy.LayerInfo method) get_spots_from_beamset() (in module opengate.contrib.tps.ionbeamtherapy) get_tests_data_folder() (in module opengate_core.testsDataSetup) get_theta_x() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_theta_y() (opengate.contrib.beamlines.ionbeamline.BeamlineModel method) get_time_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) get_transform_orbiting() (in module opengate.geometry.utility) get_transform_world_to_local() (in module opengate.geometry.utility) get_transform_world_to_local_old() (in module opengate.geometry.utility) get_translation_between_images_center() (in module opengate.image) get_translation_from_iso_center() (in module opengate.image) get_translation_from_rotation_with_center() (in module opengate.geometry.utility) get_volume() (opengate.engines.VolumeEngine method) (opengate.managers.VolumeManager method) get_volume_position_in_head() (in module opengate.contrib.spect.genm670) get_weight_index() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) GetAndClearWarnings() (opengate.contrib.tps.ionbeamtherapy.BeamInfo method) (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo method) getRange() (in module opengate.tests.utility) go() (in module opengate.bin.ideal_timed_spect_reconstruction) go_one() (in module opengate.bin.ideal_timed_spect_reconstruction) gpu_mode (opengate.sources.gansources.GANSourceDefaultGenerator attribute) gray (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr) (in module opengate.contrib.phantoms.nemaiec) green (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr)

H

half_size_mm (opengate.geometry.solids.ImageSolid attribute) half_spacing (opengate.geometry.solids.ImageSolid attribute) handler (in module opengate.logger) hc (opengate.actors.digitizers.Digitizer attribute) HEADER (opengate.uisessions.Bcolors attribute) hegp_collimator_repeater() (in module opengate.contrib.spect.genm670) HexagonSolid (class in opengate.geometry.solids)

HexagonVolume (class in opengate.geometry.volumes) hook_log (opengate.engines.SimulationEngine attribute) (opengate.engines.SimulationOutput attribute) HounsfieldUnit_to_material() (in module opengate.geometry.materials) HU_find_max_density_difference() (in module opengate.geometry.materials) HU_linear_interpolate_densities() (in module opengate.geometry.materials) HU_read_density_table() (in module opengate.geometry.materials) HU_read_materials_table() (in module opengate.geometry.materials)

I

iec_lung (in module opengate.contrib.phantoms.nemaiec) iec_plastic (in module opengate.contrib.phantoms.nemaiec) image (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) (opengate.sources.gansources.VoxelizedSourcePDFSampler attribute) (opengate.sources.voxelsources.VoxelsSource attribute) ImageSolid (class in opengate.geometry.solids) ImageVolume (class in opengate.geometry.volumes) img_info (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) img_origin_during_run (opengate.actors.doseactors.DoseActor attribute) (opengate.actors.doseactors.LETActor attribute) imga (opengate.sources.gansources.VoxelizedSourcePDFSampler attribute) import_gaga_phsp() (in module opengate.sources.gansources) import_garf() (in module opengate.actors.arfactors) indent() (in module opengate.utility) indexes_are_build (opengate.sources.gansources.GANSourceDefaultGenerator attribute) INFO (in module opengate.logger) info_run_timing() (in module opengate.runtiming) info_timing() (in module opengate.runtiming) init_cdf() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) init_method() (in module opengate.managers) init_NIST() (opengate.geometry.materials.MaterialDatabase method) init_user_mat() (opengate.geometry.materials.MaterialDatabase method) initialize() (opengate.actors.arfactors.ARFActor method) (opengate.actors.arfactors.ARFTrainingDatasetActor method) (opengate.actors.base.ActorBase method) (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.miscactors.MotionVolumeActor method) (opengate.actors.miscactors.SourceInfoActor method) (opengate.engines.ActorEngine method) (opengate.engines.SimulationEngine method) (opengate.engines.SourceEngine method) (opengate.geometry.materials.MaterialDatabase method) (opengate.managers.FilterManager method) (opengate.physics.Region method) (opengate.sources.gansources.GANSource method) (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.generic.GenericSource method) (opengate.sources.generic.SourceBase method) (opengate.sources.generic.TemplateSource method) (opengate.sources.phspsources.PhaseSpaceSource method) (opengate.sources.phspsources.PhaseSpaceSourceGenerator method) (opengate.sources.voxelsources.VoxelsSource method)

initialize_actors() (opengate.engines.SourceEngine method) initialize_after_runmanager() (opengate.engines.PhysicsEngine method) initialize_before_runmanager() (opengate.engines.PhysicsEngine method) initialize_em_switches() (opengate.physics.Region method) initialize_g4_em_parameters() (opengate.engines.PhysicsEngine method) initialize_g4_production_cuts() (opengate.physics.Region method) initialize_g4_region() (opengate.physics.Region method) initialize_g4_user_limits() (opengate.physics.Region method) initialize_g4_verbose() (opengate.engines.SimulationEngine method) initialize_global_cuts() (opengate.engines.PhysicsEngine method) initialize_is_done (opengate.sources.gansources.GANSourceDefaultGenerator attribute) initialize_optical_material_properties() (opengate.engines.PhysicsEngine method) initialize_parallel_world_physics() (opengate.engines.PhysicsEngine method) initialize_physics_list() (opengate.engines.PhysicsEngine method) initialize_random_engine() (opengate.engines.SimulationEngine method) initialize_regions() (opengate.engines.PhysicsEngine method) initialize_source() (opengate.sources.gansources.VoxelizedSourceConditionGenerator method) initialize_tpPhssource() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) initialize_tpsource() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) initialize_user_limits_physics() (opengate.engines.PhysicsEngine method) initialize_visualisation() (opengate.engines.VisualisationEngine method) initialize_visualisation_gdml() (opengate.engines.VisualisationEngine method) initialize_visualisation_vrml() (opengate.engines.VisualisationEngine method) initialize_volume_dictionaries() (opengate.physics.Region method) interpolate1Dprofile() (in module opengate.tests.utility) intersect_volumes() (in module opengate.geometry.volumes) IonPencilBeamSource (class in opengate.sources.beamsources) is_close() (in module opengate.contrib.tps.ionbeamtherapy) is_initialized (opengate.engines.SimulationEngine attribute) (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) is_paired (opengate.sources.gansources.GANSourceDefaultPairsGenerator attribute) is_rotation_matrix() (in module opengate.geometry.utility) IsoCenter (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) itk_dir_to_rotation() (in module opengate.image) itk_image (opengate.geometry.volumes.ImageVolume attribute) itk_image_view_from_array() (in module opengate.image)

J

json_obj_hook() (in module opengate.serialization)

K

keys_output (opengate.sources.gansources.GANSourceDefaultGenerator attribute)

KillActor (class in opengate.actors.miscactors) KineticEnergyFilter (class in opengate.actors.filters)

L

label_image (opengate.geometry.volumes.ImageVolume attribute) LayerInfo (class in opengate.contrib.tps.ionbeamtherapy) layers (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) lehr_collimator_repeater() (in module opengate.contrib.spect.genm670) LETActor (class in opengate.actors.doseactors) linear_indices (opengate.sources.gansources.VoxelizedSourcePDFSampler attribute)

load_json() (in module opengate.serialization) load_optical_properties_from_xml() (in module opengate.engines) loads_json() (in module opengate.serialization) lock (opengate.actors.arfactors.ARFActor attribute) (opengate.sources.gansources.GANSourceDefaultGenerator attribute) log (in module opengate.logger) logger (in module opengate.contrib.tps.ionbeamtherapy)

M

make_builders() (in module opengate.utility) make_docstring() (in module opengate.base) material_builders (opengate.geometry.materials.MaterialDatabase attribute) material_builders_by_filename (opengate.geometry.materials.MaterialDatabase attribute) material_database (opengate.geometry.materials.ElementBuilder attribute) (opengate.geometry.materials.MaterialBuilder attribute) (opengate.managers.VolumeManager attribute) material_to_label_lut (opengate.geometry.volumes.ImageVolume attribute) MaterialBuilder (class in opengate.geometry.materials) MaterialDatabase (class in opengate.geometry.materials) max_int (opengate.engines.SourceEngine attribute) megp_collimator_repeater() (in module opengate.contrib.spect.genm670) MetaUserInfo (class in opengate.base) MetaUserInfoSingleton (class in opengate.base) model (opengate.actors.arfactors.ARFActor attribute) model_data (opengate.actors.arfactors.ARFActor attribute) module C11 F18 Ga68 N13 Na22 O15 opengate opengate.actions opengate.actors opengate.actors.actorbuilders opengate.actors.arfactors opengate.actors.base opengate.actors.builders opengate.actors.digitizers opengate.actors.doseactors opengate.actors.filters opengate.actors.miscactors opengate.base opengate.bin opengate.bin.ideal_timed_spect_reconstruction opengate.contrib opengate.contrib.beamlines opengate.contrib.beamlines.ionbeamline opengate.contrib.dose opengate.contrib.dose.doserate opengate.contrib.linacs opengate.contrib.linacs.elektasynergy opengate.contrib.pet opengate.contrib.pet.philipsvereos opengate.contrib.pet.siemensbiograph opengate.contrib.phantoms opengate.contrib.phantoms.necr opengate.contrib.phantoms.nemaiec opengate.contrib.spect opengate.contrib.spect.genm670 opengate.contrib.tps opengate.contrib.tps.ionbeamtherapy opengate.contrib.tps.treatmentPlanPhsSource opengate.decorators opengate.definitions opengate.element opengate.engines opengate.exception opengate.geometry opengate.geometry.materials opengate.geometry.solids opengate.geometry.utility opengate.geometry.volumes opengate.image opengate.logger opengate.mac opengate.managers opengate.physics opengate.processing opengate.runtiming opengate.serialization opengate.sources opengate.sources.beamsources opengate.sources.builders opengate.sources.gansources opengate.sources.generic opengate.sources.phspsources opengate.sources.voxelsources opengate.tests opengate.tests.log opengate.tests.output opengate.tests.utility opengate.uisessions opengate.userelement opengate.userhooks opengate.userinfo opengate.utility opengate_core opengate_core.g4_bindings opengate_core.g4DataSetup opengate_core.opengate_lib opengate_core.qt5Setup opengate_core.testsDataSetup Rb82 setup Zr89

mother_g4_logical_volume (opengate.geometry.volumes.VolumeBase property) mother_volume (opengate.geometry.volumes.VolumeBase property) MotionVolumeActor (class in opengate.actors.miscactors) move_backward() (opengate.sources.gansources.GANSourceDefaultGenerator method) (opengate.sources.gansources.GANSourceDefaultPairsGenerator method) mswtot (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) multithreaded (opengate.managers.Simulation property) (opengate.Simulation property)

N

n (opengate.geometry.materials.MaterialBuilder attribute) N13 module n_sim (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) Na22 module name (opengate.actors.digitizers.Digitizer attribute) (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) Name (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) name (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) (opengate.geometry.materials.ElementBuilder attribute) (opengate.geometry.materials.MaterialBuilder attribute) (opengate.geometry.volumes.ParallelWorldVolume attribute) (opengate.geometry.volumes.VolumeTreeRoot attribute) (opengate.userinfo.UserInfo property) nb_thread (opengate.actors.miscactors.SimulationStatisticsActor attribute) need_step_limiter() (opengate.physics.Region method) need_user_special_cut() (opengate.physics.Region method) new_element() (in module opengate.element) new_materials_nb_atoms (opengate.geometry.materials.MaterialDatabase attribute) new_materials_weights (opengate.geometry.materials.MaterialDatabase attribute) new_process (opengate.engines.SimulationEngine attribute)

Nfractions (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) nist_element_names (opengate.geometry.materials.MaterialDatabase attribute) nist_material_names (opengate.geometry.materials.MaterialDatabase attribute) nlayers (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) nn (opengate.actors.arfactors.ARFActor attribute) NONE (in module opengate.logger) Notify() (opengate.exception.ExceptionHandler method) notify_managers() (opengate.engines.SimulationEngine method) np_get_circle_mean_value() (in module opengate.tests.utility) np_img_crop() (in module opengate.tests.utility) np_img_window_level() (in module opengate.tests.utility) np_plot_integrated_profile() (in module opengate.tests.utility) np_plot_profile_X() (in module opengate.tests.utility) np_plot_profile_Y() (in module opengate.tests.utility) np_plot_slice() (in module opengate.tests.utility) np_plot_slice_h_line() (in module opengate.tests.utility) np_plot_slice_v_line() (in module opengate.tests.utility) npainting (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) nspots (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) num_entries (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) Number (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) number (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) number_of_repetitions (opengate.geometry.volumes.VolumeBase property) NumberOfEnergies (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) NumberOfRangeModulators (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) NumberOfRangeShifters (opengate.contrib.tps.ionbeamtherapy.BeamInfo property)

O

O15 module OKBLUE (opengate.uisessions.Bcolors attribute) OKCYAN (opengate.uisessions.Bcolors attribute) OKGREEN (opengate.uisessions.Bcolors attribute) open_root_as_np() (in module opengate.tests.utility) opengate module opengate.actions module opengate.actors module opengate.actors.actorbuilders module opengate.actors.arfactors module opengate.actors.base module opengate.actors.builders module opengate.actors.digitizers module opengate.actors.doseactors module opengate.actors.filters module opengate.actors.miscactors module opengate.base module opengate.bin module opengate.bin.ideal_timed_spect_reconstruction module opengate.contrib module opengate.contrib.beamlines module opengate.contrib.beamlines.ionbeamline module opengate.contrib.dose module opengate.contrib.dose.doserate module opengate.contrib.linacs module opengate.contrib.linacs.elektasynergy module opengate.contrib.pet module opengate.contrib.pet.philipsvereos module opengate.contrib.pet.siemensbiograph module opengate.contrib.phantoms module opengate.contrib.phantoms.necr module opengate.contrib.phantoms.nemaiec module opengate.contrib.spect module opengate.contrib.spect.genm670 module opengate.contrib.tps module opengate.contrib.tps.ionbeamtherapy module opengate.contrib.tps.treatmentPlanPhsSource module opengate.decorators module opengate.definitions module opengate.element module opengate.engines module

opengate.exception module opengate.geometry module opengate.geometry.materials module opengate.geometry.solids module opengate.geometry.utility module opengate.geometry.volumes module opengate.image module opengate.logger module opengate.mac module opengate.managers module opengate.physics module opengate.processing module opengate.runtiming module opengate.serialization module opengate.sources module opengate.sources.beamsources module opengate.sources.builders module opengate.sources.gansources module opengate.sources.generic module opengate.sources.phspsources module opengate.sources.voxelsources module opengate.tests module opengate.tests.log module opengate.tests.output module opengate.tests.utility module opengate.uisessions module opengate.userelement module opengate.userhooks module opengate.userinfo module opengate.utility module opengate_core module opengate_core.g4_bindings module opengate_core.g4DataSetup module opengate_core.opengate_lib module opengate_core.qt5Setup module opengate_core.testsDataSetup module output (opengate.managers.Simulation attribute) (opengate.Simulation attribute) output_image (opengate.actors.digitizers.DigitizerProjectionActor attribute) output_origin (opengate.actors.doseactors.DoseActor attribute) (opengate.actors.doseactors.LETActor attribute)

P

package_data (in module setup) parallel_world_engine (opengate.geometry.volumes.ParallelWorldVolume attribute) parallel_world_engines (opengate.engines.VolumeEngine attribute) parallel_world_name (opengate.engines.ParallelWorldEngine attribute) parallel_world_names (opengate.managers.VolumeManager property) parallel_world_volume (opengate.engines.ParallelWorldEngine property) parallel_world_volumes (opengate.managers.VolumeManager attribute) ParallelWorldEngine (class in opengate.engines) ParallelWorldVolume (class in opengate.geometry.volumes) param (opengate.actors.arfactors.ARFActor attribute) parent (opengate.geometry.volumes.ParallelWorldVolume attribute) (opengate.geometry.volumes.VolumeBase attribute) (opengate.geometry.volumes.VolumeTreeRoot attribute) particle_generator (opengate.sources.phspsources.PhaseSpaceSource attribute) particle_name (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) ParticleFilter (class in opengate.actors.filters) pathCurrentFile (in module opengate_core) patient_angle (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) patient_attrs (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) patient_info (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) PatientSupportAngle (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) pdf (opengate.sources.gansources.VoxelizedSourcePDFSampler attribute) PDGCode_key (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) PhaseSpaceActor (class in opengate.actors.digitizers) phaseSpaceFolder (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) phaseSpaceList (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) phaseSpaceList_file_name (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) PhaseSpaceSource (class in opengate.sources.phspsources) PhaseSpaceSourceGenerator (class in opengate.sources.phspsources) physics_engine (opengate.engines.SimulationEngine attribute) (opengate.physics.Region attribute) (opengate.physics.UserLimitsPhysics attribute) physics_list_manager (opengate.managers.PhysicsManager attribute) physics_manager (opengate.engines.PhysicsEngine attribute) (opengate.managers.PhysicsListManager attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) PhysicsEngine (class in opengate.engines) PhysicsListManager (class in opengate.managers) PhysicsManager (class in opengate.managers) pid (opengate.engines.SimulationOutput attribute) plan_attrs (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) plan_info (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) plan_label (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property)

plan_opt_attrs (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) plan_req_attrs (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo attribute) plot2D() (in module opengate.tests.utility) plot_compare_profile() (in module opengate.tests.utility) plot_gauss_fit() (in module opengate.tests.utility) plot_hist() (in module opengate.tests.utility) plot_img_axis() (in module opengate.tests.utility) plot_img_x() (in module opengate.tests.utility) plot_img_y() (in module opengate.tests.utility) plot_img_z() (in module opengate.tests.utility) plot_profile() (in module opengate.tests.utility) points (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) points_offset (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) PolyhedraSolid (class in opengate.geometry.solids) PolyhedraVolume (class in opengate.geometry.volumes) position_key_x (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) position_key_y (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) position_key_z (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) positions (opengate.actors.miscactors.SourceInfoActor attribute) ppid (opengate.engines.SimulationOutput attribute) pps (opengate.actors.miscactors.SimulationStatisticsActor property) (opengate.actors.miscactors.TestActor property) prepare_output() (opengate.sources.generic.GenericSource method) (opengate.sources.generic.SourceBase method) prescription_dose (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) PreUserTrackingAction() (opengate.actors.miscactors.TestActor method) primary_lower_energy_threshold (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) primary_PDGCode (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) PrimaryDosimeterUnit (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) print_dic() (in module opengate.utility) print_opengate_info() (in module opengate.utility) print_test() (in module opengate.tests.utility) process_cls() (in module opengate.base) process_input_image() (opengate.geometry.volumes.ImageVolume method) pth_filename (opengate.actors.arfactors.ARFActor attribute) py_denominator_image (opengate.actors.doseactors.LETActor attribute) py_dose_image (opengate.actors.doseactors.DoseActor attribute) py_edep_image (opengate.actors.doseactors.DoseActor attribute) py_fluence_image (opengate.actors.doseactors.FluenceActor attribute) py_last_id_image (opengate.actors.doseactors.DoseActor attribute) py_numerator_image (opengate.actors.doseactors.LETActor attribute) py_output_image (opengate.actors.doseactors.LETActor attribute) py_square_image (opengate.actors.doseactors.DoseActor attribute) py_temp_image (opengate.actors.doseactors.DoseActor attribute)

R

radiation_types (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) RadiationType (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) raise_except() (in module opengate.exception) range_timing() (in module opengate.runtiming) RangeModulatorIDs (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) RangeShifterIDs (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) rashi (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) Rb82 module read() (opengate.geometry.materials.ElementBuilder method) (opengate.geometry.materials.MaterialBuilder method) read_beta_plus_spectra() (in module opengate.sources.generic) read_from_file() (opengate.geometry.materials.MaterialDatabase method) read_gan_and_keys() (opengate.sources.gansources.GANSourceDefaultGenerator method) read_image_info() (in module opengate.image) read_list_of_Phs() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) read_mac_file_to_commands() (in module opengate.utility) read_mhd() (in module opengate.tests.utility) read_next_line() (in module opengate.geometry.materials) read_one_element() (opengate.geometry.materials.MaterialBuilder method) read_one_item() (opengate.geometry.materials.MaterialDatabase method) read_one_submat() (opengate.geometry.materials.MaterialBuilder method) read_phsp_and_keys() (opengate.sources.phspsources.PhaseSpaceSourceGenerator method) read_stat_file() (in module opengate.tests.utility) read_tag() (in module opengate.geometry.materials) read_tag_with_unit() (in module opengate.geometry.materials) read_voxel_materials() (in module opengate.geometry.materials) ReceiveG4cerr() (opengate.uisessions.UIsessionSilent method) (opengate.uisessions.UIsessionVerbose method) ReceiveG4cout() (opengate.uisessions.UIsessionSilent method) (opengate.uisessions.UIsessionVerbose method) recursive_userinfo_to_dict() (in module opengate.base) recursively_search_object() (in module opengate.base) red (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr) (in module opengate.contrib.phantoms.nemaiec) Region (class in opengate.physics) regions (opengate.managers.PhysicsManager attribute) register_actor() (opengate.actions.RunAction method) register_all_actions() (opengate.engines.ActorEngine method) register_sensitive_detector_to_children() (opengate.engines.ActorEngine method) register_sensitive_detectors() (opengate.engines.ActorEngine method) register_to_volumes() (opengate.engines.VolumeEngine method) rel_diff() (in module opengate.tests.utility) rel_diff_range() (in module opengate.tests.utility) release_engines() (opengate.engines.SimulationEngine method) release_g4_references() (opengate.engines.ActionEngine method) (opengate.engines.PhysicsEngine method) (opengate.engines.SimulationEngine method) (opengate.engines.SourceEngine method) (opengate.engines.VisualisationEngine method) (opengate.geometry.solids.ImageSolid method) (opengate.geometry.solids.SolidBase method) (opengate.geometry.volumes.ImageVolume method) (opengate.geometry.volumes.ParallelWorldVolume method) (opengate.geometry.volumes.VolumeBase method) (opengate.physics.Region method)

reloadPython (in module opengate_core) render_tree() (in module opengate.geometry.utility) repeat_parametrisation (opengate.geometry.volumes.RepeatParametrisedVolume attribute) RepeatableVolume (class in opengate.geometry.volumes) repeated_volume (opengate.geometry.volumes.RepeatParametrisedVolume attribute) RepeatParametrisedVolume (class in opengate.geometry.volumes) requires_attribute() (in module opengate.decorators) requires_attribute_fatal() (in module opengate.decorators) requires_fatal() (in module opengate.decorators) requires_not_none() (in module opengate.decorators) requires_warning() (in module opengate.decorators) reset() (opengate.managers.PhysicsManager method) (opengate.managers.VolumeManager method) (opengate.physics.Region method) restore_userinfo_properties() (in module opengate.base) retrieve_g4_physics_constructor_class() (in module opengate.managers) rm (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) root_compare4() (in module opengate.tests.utility) root_compare_param() (in module opengate.tests.utility) root_compare_param_tree() (in module opengate.tests.utility) root_file (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) root_logical_volumes (opengate.physics.Region attribute) rot_g4_as_np() (in module opengate.geometry.utility) rot_np_as_g4() (in module opengate.geometry.utility) rotation (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) rotation_list (opengate.geometry.volumes.VolumeBase property) rs (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) RUN (in module opengate.logger) run() (opengate.managers.Simulation method) (opengate.Simulation method) (setup.CMakeBuild method) run_count (opengate.actors.miscactors.TestActor attribute) run_engine() (opengate.engines.SimulationEngine method) run_manager_finalizer (opengate.engines.SimulationEngine attribute) run_timing_intervals (opengate.engines.SimulationEngine attribute) (opengate.engines.SourceEngine attribute) (opengate.managers.SourceManager attribute) (opengate.sources.generic.SourceBase attribute) RunAction (class in opengate.actions)

S

sample_indices() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) sample_indices_phys() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) sample_indices_slower() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) sampler (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) samples_g4() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) sanitized_plan_label (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) save_label_image() (opengate.geometry.volumes.ImageVolume method) scale_dose() (in module opengate.tests.utility) scale_itk_image() (in module opengate.image) searchsorted2d() (opengate.sources.gansources.VoxelizedSourcePDFSampler method) sequence_check() (in module opengate.contrib.tps.ionbeamtherapy) set_beamline_model() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) set_default_generator() (opengate.sources.gansources.GANPairsSource method) (opengate.sources.gansources.GANSource method) set_default_user_info() (opengate.actors.arfactors.ARFActor method) (opengate.actors.arfactors.ARFTrainingDatasetActor static method) (opengate.actors.base.ActorBase static method) (opengate.actors.digitizers.DigitizerAdderActor static method) (opengate.actors.digitizers.DigitizerBlurringActor static method) (opengate.actors.digitizers.DigitizerEfficiencyActor static method) (opengate.actors.digitizers.DigitizerEnergyWindowsActor static method) (opengate.actors.digitizers.DigitizerHitsCollectionActor static method) (opengate.actors.digitizers.DigitizerProjectionActor static method) (opengate.actors.digitizers.DigitizerReadoutActor static method) (opengate.actors.digitizers.DigitizerSpatialBlurringActor static method) (opengate.actors.digitizers.PhaseSpaceActor static method) (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.filters.FilterBase static method) (opengate.actors.filters.KineticEnergyFilter method) (opengate.actors.filters.ParticleFilter method) (opengate.actors.filters.ThresholdAttributeFilter method) (opengate.actors.filters.TrackCreatorProcessFilter method) (opengate.actors.miscactors.KillActor method) (opengate.actors.miscactors.MotionVolumeActor static method) (opengate.actors.miscactors.SimulationStatisticsActor static method) (opengate.actors.miscactors.TestActor static method) (opengate.sources.beamsources.IonPencilBeamSource static method) (opengate.sources.gansources.GANPairsSource static method) (opengate.sources.gansources.GANSource static method) (opengate.sources.generic.GenericSource static method) (opengate.sources.generic.SourceBase static method) (opengate.sources.generic.TemplateSource static method) (opengate.sources.phspsources.PhaseSpaceSource static method) (opengate.sources.voxelsources.VoxelsSource static method) (opengate.userelement.UserElement static method) set_distance_source_to_isocenter() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) set_distance_stearmag_to_isocenter() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) set_G4_data_path() (in module opengate_core), [1] (in module opengate_core.g4DataSetup) set_group_by_depth() (opengate.actors.digitizers.DigitizerAdderActor method) set_head_orientation() (in module opengate.contrib.spect.genm670) set_hit_collection() (opengate.actors.digitizers.Digitizer method) set_max_step_size() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_max_time() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_max_track_length() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_min_ekine() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_min_range() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_param() (opengate.actors.digitizers.DigitizerBlurringActor method) (opengate.actors.digitizers.DigitizerEfficiencyActor method) (opengate.actors.digitizers.DigitizerSpatialBlurringActor method) set_param_gauss() (opengate.actors.digitizers.DigitizerBlurringActor method) set_param_inverse_square() (opengate.actors.digitizers.DigitizerBlurringActor method) set_param_linear() (opengate.actors.digitizers.DigitizerBlurringActor method) set_particles_to_simulate() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) set_phaseSpaceFolder() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) set_phaseSpaceList_file_name() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) set_production_cut() (opengate.geometry.volumes.VolumeBase method) (opengate.managers.PhysicsManager method) set_qt5_path() (in module opengate_core) (in module opengate_core.qt5Setup) set_simulation() (opengate.userelement.UserElement method) set_source_rad_energy_spectrum() (in module opengate.sources.generic) set_spots() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) set_spots_from_rtplan() (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource method) set_transform_from_user_info() (opengate.sources.voxelsources.VoxelsSource method) set_user_limits_particles() (opengate.managers.PhysicsManager method) setter_hook_verbose_level() (in module opengate.managers) setup module sigma_to_fwhm (in module opengate.definitions) sigma_x_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) sigma_y_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute)

sim (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) simu_end_time (opengate.actors.miscactors.SimulationStatisticsActor property) simu_start_time (opengate.actors.miscactors.SimulationStatisticsActor property) Simulation (class in opengate) (class in opengate.managers) simulation (opengate.actors.base.ActorBase attribute) (opengate.actors.digitizers.Digitizer attribute) (opengate.actors.miscactors.SimulationStatisticsActor attribute) (opengate.engines.SimulationEngine attribute) (opengate.engines.SimulationOutput attribute) (opengate.engines.VisualisationEngine attribute) (opengate.managers.ActorManager attribute) (opengate.managers.FilterManager attribute) (opengate.managers.PhysicsManager attribute) (opengate.managers.SourceManager attribute) (opengate.managers.VolumeManager attribute) simulation_engine (opengate.engines.ActionEngine attribute) (opengate.engines.EngineBase attribute) (opengate.engines.SourceEngine attribute) simulation_engine_wr (opengate.actors.base.ActorBase attribute) (opengate.engines.ActorEngine attribute) SimulationEngine (class in opengate.engines) SimulationOutput (class in opengate.engines) SimulationStatisticsActor (class in opengate.actors.miscactors) size_pix (opengate.geometry.volumes.ImageVolume property) SnoutID (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) SnoutPosition (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) solid_info (opengate.geometry.solids.SolidBase property) SolidBase (class in opengate.geometry.solids) source_builders (in module opengate.sources.builders) source_engine (opengate.engines.SimulationEngine attribute) source_manager (opengate.managers.Simulation attribute) (opengate.Simulation attribute) source_manager_options (opengate.engines.SourceEngine attribute) source_type_names (in module opengate.sources.builders) SourceBase (class in opengate.sources.generic) sourcedir (setup.CMakeExtension attribute) SourceEngine (class in opengate.engines) SourceInfoActor (class in opengate.actors.miscactors) SourceManager (class in opengate.managers) sources (opengate.engines.SimulationOutput attribute) (opengate.engines.SourceEngine attribute) sources_by_thread (opengate.engines.SimulationOutput attribute) spacing (opengate.geometry.volumes.ImageVolume property) special_physics_constructor_classes (opengate.managers.PhysicsListManager attribute) sphere_radius (opengate.sources.gansources.GANSourceConditionalPairsGenerator attribute) SphereSolid (class in opengate.geometry.solids) SphereVolume (class in opengate.geometry.volumes) split_spect_projections() (in module opengate.image) SpotInfo (class in opengate.contrib.tps.ionbeamtherapy) spots (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) spots_info_from_txt() (in module opengate.contrib.tps.ionbeamtherapy) sps (opengate.actors.miscactors.SimulationStatisticsActor property) (opengate.actors.miscactors.TestActor property) start() (opengate.engines.SourceEngine method) start_and_stop() (opengate.engines.SimulationEngine method) start_gdml_visu() (in module opengate.engines) start_output_origin (opengate.actors.digitizers.DigitizerProjectionActor attribute) start_simulation() (opengate.engines.ActorEngine method) start_time (opengate.actors.miscactors.TestActor attribute) start_visualisation() (opengate.engines.VisualisationEngine method) start_vrml_visu() (in module opengate.engines) StartSimulationAction() (opengate.actors.digitizers.DigitizerAdderActor method) (opengate.actors.digitizers.DigitizerBlurringActor method) (opengate.actors.digitizers.DigitizerEfficiencyActor method) (opengate.actors.digitizers.DigitizerEnergyWindowsActor method) (opengate.actors.digitizers.DigitizerHitsCollectionActor method) (opengate.actors.digitizers.DigitizerProjectionActor method) (opengate.actors.digitizers.DigitizerReadoutActor method) (opengate.actors.digitizers.DigitizerSpatialBlurringActor method) (opengate.actors.digitizers.PhaseSpaceActor method) (opengate.actors.doseactors.DoseActor method) (opengate.actors.doseactors.FluenceActor method) (opengate.actors.doseactors.LETActor method) (opengate.actors.miscactors.SimulationStatisticsActor method) (opengate.actors.miscactors.TestActor method) state (opengate.geometry.materials.MaterialBuilder attribute) step_count (opengate.actors.miscactors.TestActor attribute) SteppingAction() (opengate.actors.miscactors.TestActor method) stop_simulation() (opengate.engines.ActorEngine method) store_actors() (opengate.engines.SimulationOutput method) store_hook_log() (opengate.engines.SimulationOutput method) store_sources() (opengate.engines.SimulationOutput method) subtract_volumes() (in module opengate.geometry.volumes) symbol (opengate.geometry.materials.ElementBuilder attribute) (opengate.geometry.materials.MaterialBuilder attribute)

T

t0 (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) t1 (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) target_func() (in module opengate.processing) target_ROI_name (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) target_ROI_number (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) TemplateSource (class in opengate.sources.generic) test_ok() (in module opengate.tests.utility) test_tps_spot_size_positions() (in module opengate.tests.utility) test_weights() (in module opengate.tests.utility) TestActor (class in opengate.actors.miscactors) theta_x_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) theta_y_coeffs (opengate.contrib.beamlines.ionbeamline.BeamlineModel attribute) ThresholdAttributeFilter (class in opengate.actors.filters) to_dictionary() (opengate.base.GateObject method) (opengate.managers.PhysicsManager method) (opengate.managers.Simulation method) (opengate.managers.VolumeManager method) (opengate.physics.Region method) (opengate.Simulation method) to_json_file() (opengate.managers.Simulation method) (opengate.Simulation method) to_json_string() (opengate.managers.Simulation method) (opengate.Simulation method) tps (opengate.actors.miscactors.SimulationStatisticsActor property) (opengate.actors.miscactors.TestActor property) track_count (opengate.actors.miscactors.TestActor attribute) track_types (opengate.actors.miscactors.TestActor attribute) TrackCreatorProcessFilter (class in opengate.actors.filters) transform_images_point() (in module opengate.image) translate_particle_name_gate2G4() (in module opengate.physics) translate_point_to_volume() (in module opengate.geometry.utility) translation (opengate.contrib.tps.ionbeamtherapy.TreatmentPlanSource attribute) (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) translation_list (opengate.geometry.volumes.VolumeBase property) transparent (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.nemaiec) TrapSolid (class in opengate.geometry.solids) TrapVolume (class in opengate.geometry.volumes) TrdSolid (class in opengate.geometry.solids) TrdVolume (class in opengate.geometry.volumes)

TreatmentMachineName (opengate.contrib.tps.ionbeamtherapy.BeamInfo property) TreatmentPlanPhsSource (class in opengate.contrib.tps.treatmentPlanPhsSource) TreatmentPlanSource (class in opengate.contrib.tps.ionbeamtherapy) tree (opengate.actors.miscactors.SourceInfoActor attribute) TubsSolid (class in opengate.geometry.solids) TubsVolume (class in opengate.geometry.volumes) tuneID (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) type (opengate.geometry.materials.ElementBuilder attribute) (opengate.geometry.materials.MaterialBuilder attribute) type_name (opengate.actors.arfactors.ARFActor attribute) (opengate.actors.arfactors.ARFTrainingDatasetActor attribute) (opengate.actors.digitizers.DigitizerAdderActor attribute) (opengate.actors.digitizers.DigitizerBlurringActor attribute) (opengate.actors.digitizers.DigitizerEfficiencyActor attribute) (opengate.actors.digitizers.DigitizerEnergyWindowsActor attribute) (opengate.actors.digitizers.DigitizerHitsCollectionActor attribute) (opengate.actors.digitizers.DigitizerProjectionActor attribute) (opengate.actors.digitizers.DigitizerReadoutActor attribute) (opengate.actors.digitizers.DigitizerSpatialBlurringActor attribute) (opengate.actors.digitizers.PhaseSpaceActor attribute) (opengate.actors.doseactors.DoseActor attribute) (opengate.actors.doseactors.FluenceActor attribute) (opengate.actors.doseactors.LETActor attribute) (opengate.actors.filters.KineticEnergyFilter attribute) (opengate.actors.filters.ParticleFilter attribute) (opengate.actors.filters.ThresholdAttributeFilter attribute) (opengate.actors.filters.TrackCreatorProcessFilter attribute) (opengate.actors.miscactors.KillActor attribute) (opengate.actors.miscactors.MotionVolumeActor attribute) (opengate.actors.miscactors.SimulationStatisticsActor attribute) (opengate.actors.miscactors.SourceInfoActor attribute) (opengate.actors.miscactors.TestActor attribute) (opengate.geometry.volumes.RepeatParametrisedVolume attribute) (opengate.sources.beamsources.IonPencilBeamSource attribute) (opengate.sources.gansources.GANPairsSource attribute) (opengate.sources.gansources.GANSource attribute) (opengate.sources.generic.GenericSource attribute) (opengate.sources.generic.TemplateSource attribute) (opengate.sources.phspsources.PhaseSpaceSource attribute) (opengate.sources.voxelsources.VoxelsSource attribute) (opengate.userinfo.UserInfo attribute)

U

ui_session (opengate.engines.SimulationEngine attribute) uid (opengate.contrib.tps.ionbeamtherapy.BeamsetInfo property) UIsessionSilent (class in opengate.uisessions) UIsessionVerbose (class in opengate.uisessions) uncertainty_image (opengate.actors.doseactors.DoseActor attribute) UNDERLINE (opengate.uisessions.Bcolors attribute) unite_volumes() (in module opengate.geometry.volumes) UNUSED_megp_collimator_repeater_parametrised() (in module opengate.contrib.spect.genm670) update_image_py_to_cpp() (in module opengate.image) update_tac_activity() (opengate.sources.generic.GenericSource method) update_volume_tree() (opengate.managers.VolumeManager method) update_volume_tree_if_needed() (opengate.managers.VolumeManager method) use_activity_origin (opengate.sources.gansources.VoxelizedSourceConditionGenerator attribute) use_multithread (opengate.managers.Simulation property) (opengate.Simulation property) user_hook_active_regions() (in module opengate.userhooks) user_hook_after_init (opengate.engines.SimulationEngine attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) user_hook_after_run (opengate.engines.SimulationEngine attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) user_hook_dump_material_properties() (in module opengate.userhooks) user_hook_em_switches() (in module opengate.userhooks) user_info (opengate.sources.gansources.GANSourceDefaultGenerator attribute) (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) (opengate.userelement.UserElement attribute)

user_info_actors (opengate.managers.ActorManager attribute) user_info_defaults (opengate.base.GateObject attribute) (opengate.base.GateObjectSingleton attribute) (opengate.geometry.solids.BooleanSolid attribute) (opengate.geometry.solids.BoxSolid attribute) (opengate.geometry.solids.ConsSolid attribute) (opengate.geometry.solids.HexagonSolid attribute) (opengate.geometry.solids.PolyhedraSolid attribute) (opengate.geometry.solids.SphereSolid attribute) (opengate.geometry.solids.TrapSolid attribute) (opengate.geometry.solids.TrdSolid attribute) (opengate.geometry.solids.TubsSolid attribute) (opengate.geometry.volumes.ImageVolume attribute) (opengate.geometry.volumes.RepeatParametrisedVolume attribute) (opengate.geometry.volumes.VolumeBase attribute) (opengate.managers.PhysicsManager attribute) (opengate.managers.Simulation attribute) (opengate.physics.Region attribute) (opengate.Simulation attribute) user_info_filters (opengate.managers.FilterManager attribute) user_info_physics_manager (opengate.engines.PhysicsEngine property) user_info_sources (opengate.managers.SourceManager attribute) UserElement (class in opengate.userelement) UserInfo (class in opengate.userinfo) UserLimitsPhysics (class in opengate.physics)

V

vec_g4_as_np() (in module opengate.geometry.utility) vec_np_as_g4() (in module opengate.geometry.utility) verbose_close (opengate.engines.EngineBase attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) (opengate.userelement.UserElement attribute) verbose_getstate (opengate.engines.EngineBase attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute) (opengate.userelement.UserElement attribute) verify_necessary_parameters_are_set() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) verify_phs_files_exist() (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource method) version (in module setup) (opengate.sources.gansources.VoxelizedSourcePDFSampler attribute) visu_engine (opengate.engines.SimulationEngine attribute) VisualisationEngine (class in opengate.engines) volume_depth_in_tree (opengate.geometry.volumes.VolumeBase property) volume_engine (opengate.actors.base.ActorBase attribute) (opengate.engines.SimulationEngine attribute) (opengate.geometry.volumes.VolumeBase attribute) volume_manager (opengate.engines.VolumeEngine attribute) (opengate.geometry.volumes.ParallelWorldVolume attribute) (opengate.geometry.volumes.VolumeTreeRoot attribute) (opengate.managers.Simulation attribute) (opengate.Simulation attribute)

volume_name (opengate.actors.digitizers.Digitizer attribute) volume_names (opengate.managers.VolumeManager property) volume_orbiting_transform() (in module opengate.geometry.utility) volume_tree_root (opengate.managers.VolumeManager attribute) volume_type (opengate.geometry.volumes.VolumeBase property) volume_types (opengate.managers.VolumeManager attribute) VolumeBase (class in opengate.geometry.volumes) VolumeEngine (class in opengate.engines) VolumeManager (class in opengate.managers) volumes (opengate.managers.VolumeManager attribute) volumes_regions_lut (opengate.managers.PhysicsManager attribute) VolumeTreeRoot (class in opengate.geometry.volumes) voxelize_geometry() (opengate.managers.Simulation method) (opengate.Simulation method) voxelize_volume() (in module opengate.image) VoxelizedSourceConditionGenerator (class in opengate.sources.gansources) VoxelizedSourcePDFSampler (class in opengate.sources.gansources) VoxelsSource (class in opengate.sources.voxelsources)

W

w (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute) (opengate.sources.phspsources.PhaseSpaceSourceGenerator attribute) WARNING (opengate.uisessions.Bcolors attribute) warning() (in module opengate.exception) (in module setup) water (in module opengate.contrib.phantoms.nemaiec) weight_key (opengate.contrib.tps.treatmentPlanPhsSource.TreatmentPlanPhsSource attribute) weights (opengate.contrib.tps.ionbeamtherapy.LayerInfo property) white (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr)

world (opengate.managers.Simulation property) (opengate.Simulation property) world_volume (opengate.geometry.volumes.VolumeBase property) (opengate.managers.VolumeManager property) write() (opengate.actors.miscactors.SimulationStatisticsActor method) (opengate.actors.miscactors.TestActor method) write_gauss_param_to_file() (in module opengate.tests.utility)

X

x (opengate.contrib.tps.ionbeamtherapy.LayerInfo attribute)

xiec (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute)

Y

y (opengate.contrib.tps.ionbeamtherapy.LayerInfo attribute) yellow (in module opengate.contrib.pet.philipsvereos) (in module opengate.contrib.pet.siemensbiograph) (in module opengate.contrib.phantoms.necr)

yiec (opengate.contrib.tps.ionbeamtherapy.SpotInfo attribute)

Z

Zeff (opengate.geometry.materials.ElementBuilder attribute)

Zr89 module